Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq298 233 4e-59 seq4367 181 2e-43 seq2278 131 3e-28 >seq298 Length=195704 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 125661 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 125720 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 125721 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 125779 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 125780 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 125839 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 125840 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 125898 Query 311 GTTAGGGG 318 ||| |||| Sbjct 125899 GTTGGGGG 125906 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| || | |||| | |||||||||||| Sbjct 135452 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCTTACGCTCTGTATACATTAGCAT 135511 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 135512 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 135570 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| ||||| ||| | ||||| || |||||| ||||||||||||||||||| Sbjct 135571 TAATAGGGACAGTCGAGGGCATTCGTATTTCATAGTCAGAAGTGAAATTCTTGGATTTAT 135630 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 135631 GAAAGACGAATAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 135689 Query 311 GTTAGGGG 318 ||| |||| Sbjct 135690 GTTGGGGG 135697 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 137249 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 137308 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 137309 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 137367 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 137368 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 137427 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||| ||||||||||||||||| ||| |||| Sbjct 137428 GAAAGACGAACAACTGCGAAAGCATTTTCCAATGATGTTTTCATTAATCA-AGAATGAAA 137486 Query 311 GTTAGGGG 318 || |||| Sbjct 137487 TTTGGGGG 137494 Score = 215 bits (238), Expect = 9e-54 Identities = 199/248 (80%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||| | |||||||||||| Sbjct 113701 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCAT 113760 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | | |||| |||||| | ||| || |||||||| Sbjct 113761 GGGATAACATTATAGGATTTTTA-TCATATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 113819 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 113820 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 113879 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 113880 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 113938 Query 311 GTTAGGGG 318 ||| |||| Sbjct 113939 GTTGGGGG 113946 >seq4367 Length=7022 Score = 181 bits (200), Expect = 2e-43 Identities = 213/284 (75%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | |||||||||||||| ||||||||||| | Sbjct 1979 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACTTTTACTTTGAACAAATTAGAGTGCTT 2038 Query 100 AAAGCAGGCCT----TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| |||| | |||||||||||| ||||||||| | |||| Sbjct 2039 CAAGCAGGCTGGATATTGCCTGAATGCTAGTGCATGGAATAATGGAATAGGACCT-CGGT 2097 Query 156 TCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||||||||| || ||| | |||||||||||| | || || |||||| | Sbjct 2098 TCTATTTTGTTGGTTTTCAGAACCAGAGGTAATGATTAATGGAGACAGGCGGGGGCATTC 2157 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||| ||||| || |||||||| Sbjct 2158 GTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCA 2217 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || || |||| ||||||||||||| || Sbjct 2218 TTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTAGAGG 2260 >seq2278 Length=30574 Score = 131 bits (144), Expect = 3e-28 Identities = 136/176 (77%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| | | |||| | |||||||||||| Sbjct 23123 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGTTTACGCTCTGTATACATTAGCAT 23064 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 23063 GGGATAACATTATAGGATTT-CGATCCTATTATGTTGGCCTTCGGGATCGGAGTAATGAT 23005 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||| | ||| ||||| ||| | ||||| || ||||||||| |||||||||||| Sbjct 23004 TAACATGGACAGTCGAGGGCATTCGTATTTCATAGTCAGAGGTTAAATTCTTGGAT 22949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915138059264