Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq161 230 6e-58 seq842 183 8e-44 seq2020 159 9e-37 seq392 111 4e-22 seq45 104 6e-20 seq790 80.6 7e-13 seq91 80.6 7e-13 >seq161 Length=278270 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 192388 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 192447 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 192448 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 192507 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 192508 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 192567 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 192568 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 192627 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 192628 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 192687 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 192688 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 192747 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 192748 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 192796 >seq842 Length=174314 Score = 183 bits (202), Expect = 8e-44 Identities = 244/335 (73%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 55698 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 55639 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123 || ||||||| ||| ||||||||| | || |||||||| | || || || || Sbjct 55638 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTT-GAAAG---TG 55583 Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | | | || ||| | | ||| || | || | ||| ||||| | |||| Sbjct 55582 AAAGTCGC---CAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 55526 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| | ||| || ||||||| ||| | | |||||| |||| | Sbjct 55525 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 55466 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||| | ||||| || |||||| || ||||||| |||| ||| ||| | Sbjct 55465 CGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGTAGCGAACGG 55406 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||| ||| |||||||| Sbjct 55405 GATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 55371 >seq2020 Length=40899 Score = 159 bits (176), Expect = 9e-37 Identities = 234/328 (71%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 |||||||| ||||||||| ||||||| ||||||| ||||| ||| ||||||| ||| Sbjct 20744 AATAAGCATCGGCTAACTCTGTGCCAGTAGCCGCGAAAATACAGAGGATGCAAGCATTAT 20803 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 |||||| | |||||||||||||| | ||| || | | |||| | || | |||||| Sbjct 20804 CCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCTGGCATCAAATCCAA 20863 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG-AGGGG--GG 188 ||||| |||| ||| || | | ||| | || |||| ||| ||||| | Sbjct 20864 GGGCTCAACCCTGGACAGGCTGTGGAAACTACCAAGCTTGAGT---ACAGTAGGGGCAGA 20920 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 |||||| | ||| ||| |||||| | ||||| || | | ||| ||||| ||| || Sbjct 20921 GGGAATTTCCGGTGGAGCGGTGAAAGGTGTAGAGATCGGAAAGAATACCAACGGCAAAAT 20980 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 || | ||||| | |||||||| || | ||||| || ||||||| || ||||||| Sbjct 20981 CACTCTGCTGGGCTGACACTGACACTGAGAGACGAAGGCTAGGGGAGCGAATGGGATTAG 21040 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGA 336 |||||| ||||||| ||| |||| || Sbjct 21041 ATACCCCAGTAGTCCTAGCCGTAAATGA 21068 >seq392 Length=158512 Score = 111 bits (122), Expect = 4e-22 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | ||| || ||||| | | ||| | Sbjct 52518 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAACTCTATGGATCTAC 52577 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| |||| | ||||||||| | ||||| || |||||| || | |||| Sbjct 52578 GAAGGAATGCCAAAAGTGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCAAAAG 52637 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||| ||||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 52638 CATGGATAGCAAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 52688 Score = 107 bits (118), Expect = 5e-21 Identities = 232/345 (67%), Gaps = 23/345 (7%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGT------- 60 || ||| |||| | ||||||| ||||| |||||||||||||| ||| ||| Sbjct 51904 GAGGAAGAAGCCCTAGCTAACTCCGTGCTAGCAGCCGCGGTAAAACGGGGGGGAGGGGGG 51963 Query 61 --GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT---GTGTAAGA 115 ||||| ||| || |||| ||| ||||||||| | |||||||| | | || Sbjct 51964 GGGCAAGTGTTCTTCAGAATGACTAGGCGTAAAGGACACATAGGCGGTTCATGGGGTTGA 52023 Query 116 CAGGTGTGAAA-TCCCCGGGCTTAACCTGGGAAT--TGCATTTGTGACTGCACGACTAGA 172 || ||||| || || ||| || || ||| || | || | ||| || Sbjct 52024 AAG---TGAAAGTCACCA-----AACAGTGGCATAATGCTTTCGAAACCACTAAACTTGA 52075 Query 173 GTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGA 232 ||| | |||||| | ||| |||| | ||| || ||||| | | ||| | | |||| Sbjct 52076 GTGAGACAGAGGAGAGTGCAATTTCGTGTGGAGGGGTGAACTCTATGGATCTACGAAGGA 52135 Query 233 ACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGG 292 | ||| | ||||||||| | ||||| || ||||| || | ||||| ||| Sbjct 52136 ATGACAAAAGTGAAGGCAGCTCTCTGGGTCTCTACCAACGCTGGTGTGCAAAAGCATGGA 52195 Query 293 GAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 52196 TAGCAAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 52240 >seq45 Length=496881 Score = 104 bits (114), Expect = 6e-20 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||||| | ||| || || |||| ||| | | |||||| |||| |||||| Sbjct 1152 GTGGAATTTCGTGTGGAGGGGTAAAATCTACGGATCTACGAAGGAACGCCAAAAGCGAAG 1211 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||||| | ||||| || |||||| || ||||||| |||| ||| ||| |||||| Sbjct 1212 GCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGTAGCGAACGGGATTA 1271 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||| ||| |||||||| Sbjct 1272 GATACCCTGGTAGTCCATGCCGTAAACGAT 1301 >seq790 Length=159370 Score = 80.6 bits (88), Expect = 7e-13 Identities = 73/93 (78%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||| |||| ||| ||| Sbjct 46987 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGC-------ATACAGAGGATGC 47039 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||| |||||| | |||||||||||||| Sbjct 47040 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGT 47072 >seq91 Length=358571 Score = 80.6 bits (88), Expect = 7e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 229 AGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCG 288 |||||| |||| || |||||||| | ||||| || |||||| || ||||||| Sbjct 261506 AGGAACGCCAAAAGCAAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCA 261447 Query 289 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTC 322 |||| ||| ||| ||||||||||||||||||||| Sbjct 261446 TGGGTAGCGAACGGGATTAGATACCCTGGTAGTC 261413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289512719872