Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq161 269 7e-70 seq842 257 4e-66 seq76 123 6e-26 seq2924 114 3e-23 >seq161 Length=278270 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 197689 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 197630 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197629 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 197570 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 197569 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 197510 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 197509 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 197450 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 197449 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 197396 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 197395 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 197353 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 197352 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 197295 >seq842 Length=174314 Score = 257 bits (284), Expect = 4e-66 Identities = 304/412 (74%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||||| ||| | |||||||||| || Sbjct 115123 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 115182 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 115183 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 115242 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 115243 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 115296 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 115297 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 115356 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 115357 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 115416 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 115417 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 115461 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 115462 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 115513 >seq76 Length=577339 Score = 123 bits (136), Expect = 6e-26 Identities = 206/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 || |||| |||||||||||||| || || |||||| ||| ||| ||| ||| | Sbjct 557268 GCAGATAGTCTGCATCTTCACAGACATGTCTATTTCAGTGAAACTCTCTCCGAGTCAGTG 557327 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||| |||| || || |||| ||| ||||||| |||||||||||| ||||||| Sbjct 557328 CCCAAATCATTACACCTTTTGTGCGTGTCAGAACTTATTTGACAAGGAATTTTGCTACCT 557387 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180 |||||||| || ||||| | |||||||| | |||||||| || ||| | | || | Sbjct 557388 AAGGACCGTAATAGTTACAACTGCCGTTTA-CTGGGCTTCGGTCGCCGGCTCCCCTGTCA 557446 Query 181 GC---TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | | ||| | || |||||| | || |||||||||| | || || | | Sbjct 557447 TCAAGTCACCAACTTCTTTGACCTTCTGTCATTGGGCAGGCGTGAGCCCTCATGCATAGT 557506 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 ||| || ||||| ||| ||||| ||||| ||||||||| | || ||||| Sbjct 557507 CTTACGACTTTGCGGAGACCTGTG-TTTTAGTAAACAGTCCCCCGGGACTGGT 557558 >seq2924 Length=20674 Score = 114 bits (126), Expect = 3e-23 Identities = 189/271 (70%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||| || || |||||||||| ||| ||| ||| ||| || || Sbjct 18048 GCATCTTCACATACATGTCTATTTCACTGAACCTCTCTCTGAGTCAGTGCCCAAATTATT 17989 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || || |||| ||| |||||| | |||||||||||| |||||| |||||| | | Sbjct 17988 ACACCTTTGGTGCGTGTCACAACTTATCTGACAAGGAATTTTTCTACCTAAGGACCATAA 17929 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| || || | ||| | |||||||| || ||| | | | || | ||| Sbjct 17928 TATTTACAGCTGCGGCTTA-CTGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 17870 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||| |||| |||||||| ||| ||| || | | ||| || ||| Sbjct 17869 ACTTCTTTGACCTTCTGGCATTGGGCAGGCATCAGCCCCCATGCATAGTCTTACGACTTT 17810 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || ||| ||||||||||| ||||||||||| Sbjct 17809 GCGGAGACCTGTGTTTTTAGTAAACAGTCGC 17779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260714669056