Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq4367 98.7 5e-19 seq717 89.7 2e-16 seq298 89.7 2e-16 seq6348 84.2 1e-14 seq1451 84.2 1e-14 seq2278 71.6 6e-11 >seq4367 Length=7022 Score = 98.7 bits (108), Expect = 5e-19 Identities = 84/102 (82%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||||||| Sbjct 4527 GGAAAAGAAACTAACAAGGATTCCCCTAGTAGCAGCGAGCGAACAGGGAAGAGCCCAGCG 4586 Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 | |||| ||||| || || | | |||||| |||| |||| Sbjct 4587 CTGAATCCCCCGGGCCTCGCTCG---GCGGGAAATGTAGCGT 4625 >seq717 Length=192076 Score = 89.7 bits (98), Expect = 2e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 176223 GGAAAAGAAACTAACTAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 176165 Score = 75.2 bits (82), Expect = 5e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| || ||| ||||| |||| || ||||||||||| Sbjct 160253 GGAAAAGAAACTAACTAGGATTCCCTTAGAAACAGCGAGCGAACCGGAAAGAGCCCAGC 160195 >seq298 Length=195704 Score = 89.7 bits (98), Expect = 2e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 115460 GGAAAAGAAACTAACTAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 115518 Score = 89.7 bits (98), Expect = 2e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 127402 GGAAAAGAAACTAACTAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 127460 >seq6348 Length=1039 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||||| Sbjct 348 GGAAAAGAAACTAACTAGGATTCCCTTAGTAACGGCGAGCAAACCGGGAAGAGCCCAGC 406 >seq1451 Length=95249 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||| |||| |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 22580 GGAAAAGAAAATAACTAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 22522 >seq2278 Length=30574 Score = 71.6 bits (78), Expect = 6e-11 Identities = 50/57 (88%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 ||||| |||||||| || ||||||| |||||||||||| |||| |||||||||||| Sbjct 21727 GGAAAGAAAACTAACTAGTATTCCCTTAGTAACGGCGAGCGAACTGGGAAGAGCCCA 21671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230385381120