Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq161 338 1e-90 seq842 264 2e-68 seq2924 190 4e-46 seq76 178 3e-42 >seq161 Length=278270 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 197689 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 197630 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197629 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 197570 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 197569 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 197510 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 197509 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 197450 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 197449 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 197390 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 197389 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 197338 >seq842 Length=174314 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| | ||| || ||||||| | | Sbjct 115123 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 115182 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 115183 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 115242 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 115243 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 115294 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 115295 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 115354 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 115355 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 115414 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 115415 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 115474 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 115475 CTTCGACATGGTTCTC 115490 >seq2924 Length=20674 Score = 190 bits (210), Expect = 4e-46 Identities = 257/354 (73%), Gaps = 13/354 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||| || || | |||| |||||||||||| || Sbjct 18048 GCATCTTCACATACATGTCTATTTCACTGAACCTCTCTCTGAGTCAGTGCCCAAATTATT 17989 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||||| ||| |||||| | |||||||||||| |||||| |||||| | | Sbjct 17988 ACACCTTTGGTGCGTGTCACAACTTATCTGACAAGGAATTTTTCTACCTAAGGACCATAA 17929 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 || |||| || || | |||||||| ||| || | ||| | | | | ||| || Sbjct 17928 TATTTACAGCTGCGGCTTACTGGG-CTTCGGTCGCCGGCTCCCCTGTC---ATCAGGTCA 17873 Query 187 CC-------TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 || || |||||| ||| |||||||| ||||| || || ||| ||||| |||| Sbjct 17872 CCAACTTCTTTGACCTTCTGGCATTGGGCAGGCATCAGCCCCCATGCATAGTCTTACGAC 17813 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC-GGCCTGTC 298 || || || |||||||||||| |||||||||||| | | || || |||| || | Sbjct 17812 TTTGCGGAGACCTGTGTTTTTAGTAAACAGTCGCCCGAGACTGGTCACTGCAATCCCCTT 17753 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||||||||| ||| | |||||||| |||| |||| Sbjct 17752 TGTGAGGGGCACCCCTTCTCCCTAAGTTATGGGCT-ATTTTGCCAAGTTTCTTA 17700 >seq76 Length=577339 Score = 178 bits (196), Expect = 3e-42 Identities = 256/355 (72%), Gaps = 16/355 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||| || || | ||| ||||||||||||| || Sbjct 557279 GCATCTTCACAGACATGTCTATTTCAGTGAAACTCTCTCCGAGTCAGTGCCCAAATCATT 557338 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||||| ||| ||||||| |||||||||||| ||||||| |||||||| | Sbjct 557339 ACACCTTTTGTGCGTGTCAGAACTTATTTGACAAGGAATTTTGCTACCTAAGGACCGTAA 557398 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||| | |||||||||| |||||| || | ||| | | | || | || Sbjct 557399 TAGTTACAACTGCCGTTTACT-GGGCTTCGGTCGCCGGCTCCCCTGTCATCAAGTCACCA 557457 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | | || |||||| || |||||||||| ||| | || ||| ||||| |||||| Sbjct 557458 ACTTCTTTGACCTTCTGTCATTGGGCAGGCGTGAGCCCTCATGCATAGTCTTACGACTTT 557517 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGT 297 || || ||||||| |||| |||||||||| | ||| || || ||| || ||| Sbjct 557518 GCGGAGACCTGTG-TTTTAGTAAACAGTCCCCCGGGACTGGTCAATGCAACCCCCTTTGT 557576 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||| ||||| ||| ||| | |||||||| |||| |||| Sbjct 557577 ----GAGGGGCACCCCTTCTTCCTAATTTATGGGCT-ATTTTGCCAAGTTTCTTA 557626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062328096768