Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq161 475 1e-131 seq2020 334 2e-89 seq842 197 4e-48 seq352 197 4e-48 seq392 170 6e-40 seq803 156 1e-35 seq3762 152 2e-34 seq91 132 1e-28 seq620 84.2 7e-14 >seq161 Length=278270 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 192794 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 192853 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 192854 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 192913 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 192914 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 192971 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 192972 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 193031 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 193032 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 193091 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 193092 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 193151 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 193152 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 193211 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 193212 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 193271 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 193272 CGGTGAATTCGTTCCCG 193288 >seq2020 Length=40899 Score = 334 bits (370), Expect = 2e-89 Identities = 344/446 (77%), Gaps = 3/446 (1%) Strand=Plus/Plus Query 52 GTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC 111 ||||||||||||||||||||||| |||| |||||||||| ||||| |||||||| | Sbjct 21169 GTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCATACCAGGGCTTGACATGCCG 21228 Query 112 TGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGT 171 ||| ||||| || | ||| | | || |||||| ||| | ||||||| ||||||| Sbjct 21229 TGAATCCTCTTGAAAGAGACGGGTGCC-TTCGGGA-ACACGGACACAGGTGGTGCATGGC 21286 Query 172 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAG 231 || |||||||||||| || || |||| |||||||||||||||| ||| ||||||| | Sbjct 21287 TGGCGTCAGCTCGTGCCGAAAGGTGTTAGGTTAAGTCCCGCAACAAGCACAACCCTCGTG 21346 Query 232 CTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAA 291 |||||||||| | || |||| || || || | ||||| ||||| || || || ||| Sbjct 21347 TTTAGTTGCCAACGTTGAGTTTGGAACCCTGAACAGACTGTTGGTGATAAGCCAGAAGAA 21406 Query 292 GGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAAT 351 |||| ||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| Sbjct 21407 GGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCTTGGGCGACACACGTGCTACAAT 21466 Query 352 GGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAG 411 || || || |||| | | || | |||| | || ||| ||| || ||||| Sbjct 21467 GGCCAGGTCATAGGGTCGTGTTACAGTGAGGGTGACATAACTCCAAAAACCCGTCCTCAG 21526 Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 || ||||| ||| |||||||| |||| |||||||| ||||||||||||||||| | ||| Sbjct 21527 TTTGGATTATAGGCTGCAACTTGACTTTATGAAGCCGGAATCGCTAGTAATCGCCGGTCA 21586 Query 472 G-CATGCTACGGTGAATACGTTCCCG 496 | ||| | ||| |||| ||||| || Sbjct 21587 GCCATACAGCGGCGAATTCGTTCTCG 21612 >seq842 Length=174314 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 54797 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 54738 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 54737 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 54678 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 54677 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 54619 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 54618 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 54563 Score = 167 bits (184), Expect = 7e-39 Identities = 179/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 55303 TACGGTCGCAAGGCCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 55244 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| |||||||||||| |||| || | || | Sbjct 55243 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTG---TCATATG----GAC 55191 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 ||| | | ||| ||| || || | | ||||||| ||||||| || Sbjct 55190 AAGA---AACCCTATCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 55134 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 55133 TCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAAACCCT 55080 Score = 105 bits (116), Expect = 2e-20 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||| ||||||||||| | |||||| |||||||||||||||||| Sbjct 53143 CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCG 53084 Query 467 GATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||||||||| ||||||||| || |||| |||| Sbjct 53083 GATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 53048 >seq352 Length=147189 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 120771 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 120830 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 120831 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 120890 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 120891 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 120949 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 120950 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 121005 Score = 159 bits (176), Expect = 1e-36 Identities = 155/198 (78%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 123864 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 123923 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| || ||| | | | ||| | Sbjct 123924 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGAAAGCAAGGCTGTAAGGCGGA 123983 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 123984 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 124042 Query 447 TGGAATCGCTAGTAATCG 464 |||||||||||||||||| Sbjct 124043 TGGAATCGCTAGTAATCG 124060 >seq392 Length=158512 Score = 170 bits (188), Expect = 6e-40 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||| ||||| || ||||| || ||||||| ||||| Sbjct 53231 GACTGCCAGTGATATACTGGAGGAAGGAGGGGATGATGTCAAGTCTGCATGCCC-TTATG 53289 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||| ||||| | ||||| ||| ||| | | ||| | Sbjct 53290 GACTGGGCCACACACGTGCTATAATGGCAATTACAATGGGAAGCAAGGCTATAAGGCGGA 53349 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 53350 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 53408 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 |||||||||||||||||| |||||||||||| | |||||| | || || Sbjct 53409 TGGAATCGCTAGTAATCGCAGATCAGCATGCCATGGTGAAAATGTACC 53456 Score = 109 bits (120), Expect = 2e-21 Identities = 141/193 (73%), Gaps = 19/193 (10%) Strand=Plus/Plus Query 43 GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102 |||||||||||||||||||||||||||||||| |||| | | |||||||||| ||| Sbjct 52767 GCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACATGCATAACCTTACCAGCCCTT 52826 Query 103 GACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCT--TCGG--GGGACAGAGTG--- 155 ||||| ||| | | | || || | | || || || | | Sbjct 52827 GACATATG--GACA---------AGAAACCTTATCCTTAATGGGATGGTACTTACTTTCA 52875 Query 156 -ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA 214 ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 52876 TACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTACAA 52935 Query 215 CGAGCGCAACCCT 227 ||||| |||||| Sbjct 52936 TGAGCGAAACCCT 52948 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 43 GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102 |||||||||||||||||||||||||||||||| ||||| | | |||||||||| ||| Sbjct 52319 GCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGTGCATAACCTTACCAGCCCTT 52378 Query 103 GACAT 107 ||||| Sbjct 52379 GACAT 52383 >seq803 Length=120194 Score = 156 bits (172), Expect = 1e-35 Identities = 165/216 (76%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 279 CAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACA 338 || || ||||||||||||||| |||||||| || |||| ||||||| || || ||| Sbjct 5083 CATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGACCTTATGGGCTGAGCCACA 5024 Query 339 CACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATA 398 ||||||||||||||| || ||||| ||| ||| | | | ||| ||| ||| || | Sbjct 5023 CACGTGCTACAATGGCCATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAAT-CCGGA 4965 Query 399 AAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAG 458 ||| | ||||||||||| | | | ||||||||| | |||||| |||||||||||| Sbjct 4964 AAGATTGCCTCAGTTCGGAATTTTCTTTGCAACTCGGGAAGATGAAGTTGGAATCGCTAG 4905 Query 459 TAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 |||||| ||||||||||| |||||||| || || Sbjct 4904 TAATCGCGGATCAGCATGCCGTGGTGAATATGTACC 4869 >seq3762 Length=12680 Score = 152 bits (168), Expect = 2e-34 Identities = 164/216 (76%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 279 CAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACA 338 || || ||||||||||||||| |||||||| || |||| |||||||| || || ||| Sbjct 11975 CATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGAGCCACA 11916 Query 339 CACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATA 398 ||||||||||||||| || ||||| ||| ||| | | | ||| ||| ||| | | Sbjct 11915 CACGTGCTACAATGGCCATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAAT-CTGGA 11857 Query 399 AAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAG 458 ||| | ||||||||||||||| | |||||||| | ||||| ||||||||||| Sbjct 11856 AAGATTGCCTCAGTTCGGATTGTTCTTTGCAACTCCGGAAGCTGAAGTTGGAATCGCTAT 11797 Query 459 TAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 |||||| ||||||||||| |||||||| || || Sbjct 11796 TAATCGCGGATCAGCATGCCGTGGTGAATATGTACC 11761 >seq91 Length=358571 Score = 132 bits (146), Expect = 1e-28 Identities = 87/96 (91%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 261395 TACGGTCGCAAGGCCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 261336 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 |||||||||||||| ||||||| |||||||||||| Sbjct 261335 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCA 261300 >seq620 Length=128651 Score = 84.2 bits (92), Expect = 7e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||||||||||||| || |||||||||| || ||||||||||||||||||||||||| Sbjct 1788 CTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCTGGAATCGCTAGTAATCGCC 1729 Query 467 GATCAGCAT 475 | |||| || Sbjct 1728 GGTCAGAAT 1720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503898209280