Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq298 307 2e-81 seq717 271 1e-70 seq2278 262 6e-68 >seq298 Length=195704 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126410 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 126351 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 126350 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 126291 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 126290 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 126231 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126230 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 126171 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 126170 AAAGAGCTCTCAGTCTGTC 126152 Score = 277 bits (306), Expect = 3e-72 Identities = 209/245 (85%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136186 TCAGTGTAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 136127 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--T 133 || ||| | | | || | | | ||||||||||||||||||| ||| || | | Sbjct 136126 AAGCTTACTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCTGCCGTGAAGGGATGCCT 136067 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | ||| |||||||| | ||||||||||||||| | |||||||||||||||||| Sbjct 136066 CCACGTATCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACAGAATTAACCAGACAAATCG 136007 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 136006 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAGCAAGAAAGAGCTCTCAGT 135947 Query 254 CTGTC 258 ||||| Sbjct 135946 CTGTC 135942 Score = 257 bits (284), Expect = 3e-66 Identities = 215/262 (82%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 114471 ACTCGTTGAATACATCAGTGTAGCGCGCATACAGCCCAGAATATCTAAGGGCATCACAGA 114412 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC---TCTAAGAAGCCA 118 |||||||||||||||||||||| | | || | | | |||||||| ||||||||||| Sbjct 114411 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCCCCTCTAAGAAGCCG 114352 Query 119 GCCACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 ||| || | || | | |||| |||||||| | |||||| |||||||| ||| Sbjct 114351 GCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTAGTTCGTTAATGGA 114292 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 114291 ATTAACCAGACAAATCGACCCACCAACTAAGAACGGCCCTGCACCACCACCCATAGAATC 114232 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||| Sbjct 114231 AAGAAAGAGCTCTCAGTCTGTC 114210 Score = 250 bits (276), Expect = 4e-64 Identities = 213/259 (82%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 137997 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAGA 137938 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||| |||| ||||||| | || | | | |||||||||||||||||| ||| Sbjct 137937 CCTGTTATTACCTCGAACTTCCTTGACCTAAACGGCCATAGTCCCTCTAAGAAGCTGGCC 137878 Query 122 ACCAA-CCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || ||| |||| |||||||| | |||| |||||| ||| |||||| Sbjct 137877 GTGAAGGGATGCCTCCATGTAGCTAGTTAGCAGGCTGAGGTTTCGTTCATTAATGGAATT 137818 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||| |||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 137817 AACCAGACAAATTGCTCCACTAATTAA-AACGGCCATGCACCACCACCCATAGAATCAAG 137759 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| | |||| Sbjct 137758 AAAGAGCTCTCAGTATGTC 137740 >seq717 Length=192076 Score = 271 bits (300), Expect = 1e-70 Identities = 216/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||| ||||| |||||||||| | |||| |||||||||||||| Sbjct 161230 ACTCGTTGAATACATCAGTGTTGCGCGTGTGCGGCCCATAGCATCAAAGGGCATCACAGA 161289 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||| |||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 161290 CCTGTTATTACCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 161349 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || ||| |||| |||||||| | |||||| |||||||| ||||||| Sbjct 161350 GTGAAGGGATGCCTCCATGTAGCTAGTTAGCAGGCTGAGGTCTTGTTCGTTAACGGAATT 161409 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161410 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 161469 Query 240 AAAGAGCTATCAATCTGTC 258 | |||||| || |||||| Sbjct 161470 AGAGAGCTCTCTGTCTGTC 161488 >seq2278 Length=30574 Score = 262 bits (290), Expect = 6e-68 Identities = 198/231 (86%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22720 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 22779 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 22780 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 22839 Query 122 ACCAA-CCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 22840 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 22899 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 22900 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCNAT 22950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796747757808