Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq161 230 5e-58 seq842 203 7e-50 seq2020 194 4e-47 seq1432 152 1e-34 seq392 140 7e-31 >seq161 Length=278270 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 192349 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 192292 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 192291 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 192232 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 192231 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 192172 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 192171 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 192125 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 192124 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 192068 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 192067 TCTTACGCGTTACTCACCCGTCCGCCACT 192039 >seq842 Length=174314 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||| | | ||| | ||||||| ||| |||||| |||| ||||||||||||| ||| Sbjct 55733 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCAGGCTTGCGC 55790 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 55791 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 55850 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||| ||| ||||||| || | ||| ||| |||||| |||| |||||| Sbjct 55851 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 55910 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 55911 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 55950 >seq2020 Length=40899 Score = 194 bits (214), Expect = 4e-47 Identities = 158/189 (84%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| ||| ||||| |||||| || ||||||||| |||||||| || Sbjct 20696 CCGTAGGTCTTCTTCCAC-CACGCAGCATTG-CTCTGTCAGGCTTTTGCCCATTGCGGAA 20639 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||| ||||||||||||||||||||| | |||| ||||| || ||||| |||| Sbjct 20638 AATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCTGTGTATCAGTCCCTGTGTGGCTGA 20579 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| | | ||| |||||||||||||| Sbjct 20578 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAACTATTGCCTCACCAACTAGC 20519 Query 190 TAATCCGAC 198 ||||| ||| Sbjct 20518 TAATCAGAC 20510 >seq1432 Length=54313 Score = 152 bits (168), Expect = 1e-34 Identities = 102/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 |||||||| || |||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 14530 GCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTC 14589 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 |||||||| ||||||||||||||||||||| ||| |||| |||||||||| ||| Sbjct 14590 CCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGC 14643 >seq392 Length=158512 Score = 140 bits (154), Expect = 7e-31 Identities = 137/174 (79%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| || ||| |||| ||||||| |||| ||||||| ||||| ||| | Sbjct 51851 CCTTCTT-CACTCATGCGATATTG-CTGGATCCAGCTTATGCCCATTATCCAAGATTTCT 51794 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| | |||||||||||| || ||||| |||||| ||| Sbjct 51793 CACTGCTGCCCCCCGTGGGAGTCCGTGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCG 51734 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||| || | ||| ||| |||||| |||| |||||| ||||| || || Sbjct 51733 AAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAAGTACCT 51680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071927447040