Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq161 264 4e-68 seq842 188 3e-45 seq76 104 8e-20 seq2924 87.8 7e-15 seq1653 84.2 8e-14 >seq161 Length=278270 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 196486 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 196427 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 196426 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 196367 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 196366 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 196307 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 196306 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 196254 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 196253 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 196200 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 196199 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 196147 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 196146 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 196087 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 196086 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 196037 >seq842 Length=174314 Score = 188 bits (208), Expect = 3e-45 Identities = 350/499 (70%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 116451 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 116510 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 116511 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 116570 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 116571 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 116630 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 116631 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 116689 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || |||| | | || |||| || | || |||| || | | | || Sbjct 116690 ----ATTC-CAC---CTTTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTCTTCCCAT 116741 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440 | ||||| | | ||| | ||||||| ||||||| | || || | || Sbjct 116742 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TG 116793 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498 ||| | || |||| |||||| ||| | |||||||| ||||| ||||||| | Sbjct 116794 ACTACTCCTTCGACTGATTGTTCGCATCGGATTTCAGGTTCTCTATTGCACTCCCGTCAT 116853 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 |||| |||||||||||||||||||||||||||| |||||||||||| |||| || || Sbjct 116854 AGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 116913 Query 559 AGGCTTAACGGGTGGTCCC 577 ||||||| |||||||||| Sbjct 116914 AGGCTTAGAGGGTGGTCCC 116932 >seq76 Length=577339 Score = 104 bits (114), Expect = 8e-20 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| ||| || | ||||| | ||||||||| || | | |||||| |||| ||||||| Sbjct 558430 CTGCGCCTCAACGTATTTCAGAGAGAACCAGATAGCTCTGGGTTTGACTGGCATTTCACC 558489 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| |||||| || | |||||||| | | | ||||| | |||| || || Sbjct 558490 CCTAACCACAACTCATCCGCTGATTTTTCAACATCAATCGGTTCAGACCTCTACTTAGTT 558549 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 | |||| |||| | |||| ||| |||||||||| Sbjct 558550 TCACCCAAGCTTTATCCTGGTCATTGATAGATCAC 558584 >seq2924 Length=20674 Score = 87.8 bits (96), Expect = 7e-15 Identities = 278/423 (66%), Gaps = 26/423 (6%) Strand=Plus/Minus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| |||||||| || ||| | |||||| || | |||||||| | | | || Sbjct 16981 GTTCGAGTGGCATTTCACCCTTAACCAGAACTCATCCGCTGATTTTTCAACATCAATCGG 16922 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 || | |||| || || | |||| |||| | |||| |||||||||||| | | Sbjct 16921 CTCAGACCTCTACTTAGTTTCACCCAAGCTTTATCCTGGTTATGGATAGATCATCCAGGT 16862 Query 299 TCGGGTCTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACC 357 |||| | | | ||| || | | ||| | |||||||||| |||| | || | Sbjct 16861 TCGGTCCATAAGAAGTGACAATTGT----CCTGTAAAGACTCGCTTTTGCTATGACT--C 16808 Query 358 CCACACGGG---TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGC 414 | | | |||||| || || | | || | ||||||||||||| |||| Sbjct 16807 CGATGAGTTCCCTTAACCAAGCCACTGT-CTTTGAGTCCCCAGCTCATTCTTCAATAGGC 16749 Query 415 ACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT--GGT 472 |||| |||| | || | ||| | |||| || ||| || |||| ||| Sbjct 16748 ACGCAGTCA----GAGCCCAG--GGCTC-----CTCCCACTTCTTG--GGAACATAGGGT 16702 Query 473 TTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 |||| || ||||||||||||| | |||| |||||||| ||||| || || ||| | Sbjct 16701 TTCATGTTCTATTTCACTCCCTGATGAGGGTTATTTTCACCCTTCCCCCATGGCACTACT 16642 Query 533 CCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGA 592 ||||||||| || | |||| || |||| | | | ||||| | ||||||||||| Sbjct 16641 TCGCTATCGGGCAGCCAGGAATACTTAGCCATGCAAGATGGTCTTTGCTGATTCACACGA 16582 Query 593 AAT 595 || Sbjct 16581 GAT 16579 >seq1653 Length=46588 Score = 84.2 bits (92), Expect = 8e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||| ||| ||||| ||||||||| ||||||||| ||||| | |||||||||||||| Sbjct 23878 ACTCTCCGATGGGGGTTCTTTTCACCCTTCCCTCACAGTACTACTTCGCTATCGGTCACC 23937 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCC 576 | |||||||||| ||| |||||||| Sbjct 23938 CAAGAGTATTTAGCCTTGCAAGGTGGTCC 23966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817476984832