Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq161 226 7e-57 seq842 116 9e-24 seq2924 109 1e-21 seq76 95.1 3e-17 seq1653 87.8 4e-15 >seq161 Length=278270 Score = 226 bits (250), Expect = 7e-57 Identities = 310/415 (75%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 196420 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 196364 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 196363 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 196308 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 196307 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 196250 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 196249 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 196193 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 196192 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 196134 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 196133 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 196074 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 196073 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 196019 >seq842 Length=174314 Score = 116 bits (128), Expect = 9e-24 Identities = 142/193 (74%), Gaps = 17/193 (9%) Strand=Plus/Plus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252 |||||||||||| || |||||||||||| || | | |||| ||| Sbjct 116746 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 116802 Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309 | |||| |||| ||||| | ||||||| ||| ||| ||||||| || ||| |||| Sbjct 116803 TCGACTGATTGTTCGCATCGGATTTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 116861 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| | Sbjct 116862 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 116921 Query 370 AGGATGGTCCCCC 382 ||| ||||||||| Sbjct 116922 AGGGTGGTCCCCC 116934 >seq2924 Length=20674 Score = 109 bits (120), Expect = 1e-21 Identities = 251/362 (69%), Gaps = 16/362 (4%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | ||||||||| | |||| || | |||| | ||||| | |||||| |||| Sbjct 16947 TCCGCTGA-TTTTTCAACATCAATCGGCTCAGACCTCTACTTAGTT-TCACCCAAGCTTT 16890 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 | |||| || ||||||||| || | || |||| || || ||| | | | Sbjct 16889 -ATCCTGGTTAT-GGATAGATCATCCAGGTTC--GGTCCATAAGA-AGTGACAATT-GTC 16836 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 || ||||||||||||| |||| | |||| | ||| |||| | ||||||| Sbjct 16835 CTGTAAAGACTCGCTTTT-GCTATGACTCCGATGAGTTCCCTTAACCAA-GCCACTGTCT 16778 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCAC 256 | |||| | | |||| | ||| ||| ||||||||| | | || | | |||||| Sbjct 16777 TTGAGTCCCCAGCTCATTCTTCAATAGGCACGCAGTCAG--AGCCCAGGGCTCCTCCCAC 16720 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 | |||| |||| ||||||| | ||||||||||| |||| ||||| ||||| || Sbjct 16719 TTCTTGGGAACATAGGGTTTCATGTTCTATTTCACT-CCCTGATGAGGGTTATTTTCACC 16661 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 ||||| || || |||| ||| ||||||| ||| ||| | || |||||| || | ||||| Sbjct 16660 CTTCCCCCATGGCACTACTTCGCTATCGGGCAGCCAGGAATACTTAGCCATGCAAGATGG 16601 Query 377 TC 378 || Sbjct 16600 TC 16599 >seq76 Length=577339 Score = 95.1 bits (104), Expect = 3e-17 Identities = 251/367 (68%), Gaps = 25/367 (7%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| | ||||||| | |||| | ||||| | Sbjct 558495 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAATCGGTTCAGACCTCTACTTAGTT-TC 558551 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| |||| | |||| ||| | ||||||| ||| | || | || || || Sbjct 558552 ACCCAAGCTTT-ATCCTGGTCATTG-ATAGATCACCCAGGTTCAG--TCCATAAGA-AGT 558606 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | | |||| |||||| |||||| |||| | |||| | ||| |||| | Sbjct 558607 GACAATT-GTCCTATAAAGACTTGCTTTT-GCTATGACTCCGGTGAGTTCCCTTAA-CAA 558663 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| | |||| | | |||| | ||| ||| ||| ||| | |||| Sbjct 558664 AGCCACTGTCTTTGAGTCCCCAGCTCATTCTTCAATAGGCACGTAGTTAGAGCCCA---- 558719 Query 244 AGTGGG--CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| ||||||||||||| | || ||||||| | ||| ||||||| ||||| Sbjct 558720 --TGGCTCCTCCCACTGCTTGGGAACTTAGGGTTTCATGTTCTCTTTCACT-CCCTCATA 558776 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||| |||| || |||||||| ||||||| ||| |||| | ||| ||| | || || Sbjct 558777 AGGGTTAATTTCACCCTTCCCTCATGGTACTACTTCGCTATTAGGCAGCCAGGAATACTT 558836 Query 362 AGCCTTG 368 | ||||| Sbjct 558837 AACCTTG 558843 >seq1653 Length=46588 Score = 87.8 bits (96), Expect = 4e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || ||||||||| |||||| ||| |||||||||| || ||||||| Sbjct 23889 GGGGTTCTTTTCACCCTTCCCTCACAGTACTACTTCGCTATCGGTCACCCAAGAGTATTT 23948 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 23949 AGCCTTGCAAGGTGGTCC 23966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241515968512