Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq298 84.2 3e-14 seq4367 80.6 3e-13 seq2278 80.6 3e-13 >seq298 Length=195704 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 135548 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 135490 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||| |||||||| ||||||||||| |||| |||| || Sbjct 135489 AGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 135452 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 125757 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 125699 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 125698 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 125661 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 137345 CCAACACAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 137287 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 137286 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 137249 >seq4367 Length=7022 Score = 80.6 bits (88), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 8/133 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | |||| ||| Sbjct 2113 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACTAGCATTCAGGCA 2055 Query 70 -TA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 || ||||||||| | ||||||||||| |||| |||||||| | || || || | Sbjct 2054 ATATCCAGCCTGCTTGAAGCACTCTAATTTGTTCAAAGTAAAAGTGCCGG-CCCACCTCG 1996 Query 125 ACAC-CAATGAAG 136 |||| |||||||| Sbjct 1995 ACACTCAATGAAG 1983 >seq2278 Length=30574 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 23027 CCAACATAATAGGATCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 23085 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 | | |||||||| ||||||||||| |||| |||| || Sbjct 23086 AACTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 23123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595160975712