Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq161 232 2e-58 seq842 167 5e-39 seq2864 154 3e-35 seq2924 138 3e-30 seq76 136 9e-30 seq64 80.6 6e-13 >seq161 Length=278270 Score = 232 bits (256), Expect = 2e-58 Identities = 303/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 197036 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 196977 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 196976 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 196917 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 196916 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTCCCC-CTAAGGC 196861 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 196860 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 196805 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 196804 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 196746 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 196745 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 196686 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 196685 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 196637 >seq842 Length=174314 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 116174 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 116230 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 116231 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 116290 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 116291 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 116350 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 116351 GTTTCCCTCTCG 116362 >seq2864 Length=48344 Score = 154 bits (170), Expect = 3e-35 Identities = 132/162 (81%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCT 298 ||||| ||||||| | | || || |||||||||||||||||||||||||||| ||||| Sbjct 30972 ACATT-TCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCT 31030 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACC 358 ||||| | || |||||||||| ||||| ||| | | || |||||| || |||| | Sbjct 31031 GCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCAATGAGCGGTC 31090 Query 359 ACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||||||||||||||| ||||| ||||||||||||| ||| Sbjct 31091 ATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTTTCG 31132 >seq2924 Length=20674 Score = 138 bits (152), Expect = 3e-30 Identities = 148/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||||||| ||| |||| ||| || | ||| || |||| | |||| || | Sbjct 17218 CCACAACTTCGGCAGATCGCTTA-GCCTCGTT-CATCTTCAGCGCAAGAGCACTCGATGA 17161 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| |||||||||| | || ||| || ||| ||||| Sbjct 17160 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACTTCATGGCTGTCTC 17101 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| ||| || | |||| |||| || || ||||| |||||||| | ||||| || Sbjct 17100 TGCACCTCTACCT-CTTTTTCACTAAGCAGTCATTTAGGAGCCTTAGCGGGTGATCCGGA 17042 Query 387 CTGTTTCCCTCT 398 |||||||||||| Sbjct 17041 CTGTTTCCCTCT 17030 >seq76 Length=577339 Score = 136 bits (150), Expect = 9e-30 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| |||||| ||| |||| ||| || | ||| ||||||| | | || || || Sbjct 558135 CCACAATTTCGGCAGATCGCTTA-GCCTCGTT-CATCTTCGGCGCAATAGCGCTCGATCA 558192 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||| | |||| | || | || | ||||||||| Sbjct 558193 GTGAGCTATTACGCACTCTTTCAAGGGTGGATTCTTCTAGGCAAGCCACATGGTTGTCTC 558252 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| || || || ||| ||||||| || ||||| |||||||| | ||||| || Sbjct 558253 TGCACCTTTACCTCTTTTTTCACTGAGCGGTCATTTAGGAGCCTTAGCGGGTGATCCGGA 558312 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 558313 CTGTTTCCCTCTCG 558326 >seq64 Length=580124 Score = 80.6 bits (88), Expect = 6e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||||||||||| ||| ||| |||||| | ||| ||||||| | | || || |||| Sbjct 399080 ACAGCTTCGGCAGATCGTTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGT 399137 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCC 304 |||||||||||||||||||||||| ||||| | ||| Sbjct 399138 GAGCTATTACGCACTCTTTCAAGGGTGGCTACCTCC 399173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177520300032