Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq842 123 2e-26 seq352 123 2e-26 seq161 122 7e-26 seq3762 100 2e-19 seq803 93.3 4e-17 seq392 87.8 1e-15 seq2020 80.6 2e-13 >seq842 Length=174314 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 54631 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 54689 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 54690 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 54749 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 54750 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 54789 >seq352 Length=147189 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 120937 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 120879 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 120878 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 120819 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 120818 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 120779 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 124030 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 123972 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || || |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 123971 CCTTGCTTTCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 123912 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 123911 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 123872 >seq161 Length=278270 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 193225 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 193166 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 193165 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 193106 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 193105 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 193066 >seq3762 Length=12680 Score = 100 bits (110), Expect = 2e-19 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||| | |||||||| ||| | | ||||| | ||| ||||| ||| | | Sbjct 11822 GAGTTGCAAAGAACAATCCGAACTGAGGCAATCTTTCCAG-ATTCGCTCCGCCTTACAGC 11880 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| |||| |||||||| ||||||| || | ||||||||||||||| Sbjct 11881 CTTGCTTCCCATTGTAATGGCCATTGTAGCACGTGTGTGGCTCAGCCCATAAGGGCCATG 11940 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTG 157 |||||||||||||||||||||||||||| || || Sbjct 11941 CGGACTTGACGTCATCCCCACCTTCCTCCAGTATG 11975 >seq803 Length=120194 Score = 93.3 bits (102), Expect = 4e-17 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | | | |||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 4929 CGAGTTGCAAAGAAAATTCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 4987 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| |||||||| ||||||| || | ||||||||| |||| Sbjct 4988 CCTTGCTTCCCATTGTAATGGCCATTGTAGCACGTGTGTGGCTCAGCCCATAAGGTCCAT 5047 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTG 157 | |||||||||||||||||||||||||||| || || Sbjct 5048 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATG 5083 >seq392 Length=158512 Score = 87.8 bits (96), Expect = 1e-15 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| ||||| ||||| ||| | Sbjct 53396 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTC-CGGATTCGCTCCGCCTTATAG 53338 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | ||||| || ||||||| |||| ||||||||| ||| Sbjct 53337 CCTTGCTTCCCATTGTAATTGCCATTATAGCACGTGTGTGGCCCAGTCCATAAGGG-CAT 53279 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||| |||||||| ||||||||| || | |||| Sbjct 53278 GCAGACTTGACATCATCCCCTCCTTCCTCCAGTATATCAC 53239 >seq2020 Length=40899 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| | |||||||| ||||| ||||||||||||||| || Sbjct 21468 CCATTGTAGCACGTGTGTCGCCCAAGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 21409 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||| || || || |||| Sbjct 21408 CCTTCTTCTGGCTTATCAC 21390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415972724960