Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq161 167 4e-39 seq2020 120 5e-25 seq842 107 3e-21 seq790 80.6 4e-13 >seq161 Length=278270 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 192672 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 192613 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 192612 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 192553 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 192552 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 192493 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 192492 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 192433 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 192432 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 192388 >seq2020 Length=40899 Score = 120 bits (132), Expect = 5e-25 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||||| | || ||| |||| ||| | | || |||| Sbjct 21009 CTCAGTGTCAGTGTCAGCCCAGCAGAGTGATTTTGCCGTTGGTATTCTTTCCGATCTCTA 20950 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 | | |||||||||| ||| | |||||| |||| || | | ||||||| |||| Sbjct 20949 CACCTTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACTGTACTCAAGCTTGGTAGTT 20890 Query 136 TCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCC 192 || | ||| || | ||||||||||| | | ||| | | ||||| || || Sbjct 20889 TCCA---CAGCCTGTCCAGGGTTGAGCCCTTGGATTTGATGCCAGACTTAAAAAGCCACC 20833 Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252 |||| | |||||| |||||| | ||||||||| |||||| ||| ||||| |||||| Sbjct 20832 TACAGACGCTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTCTGTATTTTCGCGGC 20773 Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||| ||||||||| ||||||| | ||| || Sbjct 20772 TACTGGCACAGAGTTAGCCGATGCTTATTTCCCAGATA 20735 >seq842 Length=174314 Score = 107 bits (118), Expect = 3e-21 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 55416 CCCATGCTTTCGCACACCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 55475 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 55476 TCCTTCGTAGATCCGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 55535 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| | ||||| || ||| || | ||| | |||||| | Sbjct 55536 TCAAGTTCAGTGGTTTCGAAAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 55590 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | |||||||| ||||||||| || | | | |||| | ||| |||||| || Sbjct 55591 ACCCGATGAACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 55650 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 55651 CCGTTTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 55698 >seq790 Length=159370 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/103 (77%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||| Sbjct 47082 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTAT---- 47027 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||| ||||||||| ||||||||| ||| || Sbjct 47026 ---GCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 46987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828745659728