Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq298 127 2e-27 seq4367 111 2e-22 seq2278 102 8e-20 >seq298 Length=195704 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 125661 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 125720 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 125721 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 125778 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 125779 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 125838 Query 190 T 190 | Sbjct 125839 T 125839 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 137249 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 137308 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 137309 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 137366 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 137367 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 137426 Query 190 T 190 | Sbjct 137427 T 137427 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| || | |||| | |||||||| ||| Sbjct 135452 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCTTACGCTCTGTATACATTAGCAT 135511 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 135512 GGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 135569 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||| ||| | ||||| || |||| | |||||||||||||||||| Sbjct 135570 TTAATAGGGACAGTCGAGGGCATTCGTATTTCATAGTCAGAAGTGAAATTCTTGGATTTA 135629 Query 190 T 190 | Sbjct 135630 T 135630 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 113701 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCAT 113760 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | |||| ||| || | ||| || ||||||| Sbjct 113761 GGGATAACATTATAGGATTTTTA-TCATATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 113818 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 113819 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 113878 Query 190 T 190 | Sbjct 113879 T 113879 >seq4367 Length=7022 Score = 111 bits (122), Expect = 2e-22 Identities = 134/181 (74%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT----TTGCTCGAATACATTA 65 |||||||||||||| ||||||||| | | |||||||| |||| |||| | Sbjct 2010 ACTTTTACTTTGAACAAATTAGAGTGCTTCAAGCAGGCTGGATATTGCCTGAATGCTAGT 2069 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| || ||| ||| Sbjct 2070 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 2128 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| ||| || || |||||| | ||||| || | |||||||||||||||| Sbjct 2129 ATGATTAATGGAGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 2188 Query 186 T 186 | Sbjct 2189 T 2189 >seq2278 Length=30574 Score = 102 bits (112), Expect = 8e-20 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| | | |||| | |||||||| ||| Sbjct 23123 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGTTTACGCTCTGTATACATTAGCAT 23064 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 23063 GGGATAACATTATAGGATTT-CGATCCTATTATGTTGGCCTTCGGGATCGGA-GTAATGA 23006 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| ||||| ||| | ||||| || |||| |||| |||||||||||| Sbjct 23005 TTAACATGGACAGTCGAGGGCATTCGTATTTCATAGTCAGAGGTTAAATTCTTGGAT 22949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511966430720