Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq161 269 6e-70 seq2020 201 3e-49 seq842 174 4e-41 seq1432 149 2e-33 seq392 122 2e-25 >seq161 Length=278270 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 192351 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 192292 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 192291 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 192232 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 192231 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 192172 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 192171 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 192123 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 192122 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 192065 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 192064 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 192022 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 192021 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 191978 >seq2020 Length=40899 Score = 201 bits (222), Expect = 3e-49 Identities = 288/404 (71%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||| ||||||| ||||| |||| ||| |||||||| |||||||| | || Sbjct 20698 ACCCGTAGGTCTTCTTCCACCACGCAGCATTGCTCTGTCAGGCTTTTGCCCATTGCGGAA 20639 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||| ||||||||||||||||||||| | |||| ||||| || ||||||||| Sbjct 20638 AATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCTGTGTATCAGTCCCTGTGTGGCTGA 20579 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| | ||| || | ||||||||| Sbjct 20578 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAACTATTGCCTCACCAACTAGC 20519 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| | | ||| | | || | |||| || | Sbjct 20518 TAATCAGACGCGAGCCCCTCC--TCG-----GGC----GGATTCCTCATTTTGCTCCTCA 20470 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | |||| |||||| || | ||||||| ||| | |||||| ||||| ||| Sbjct 20469 GCC--TATGGGGTATTTGCAGTCATTTCCAGCTGTTGTTACCCTCCCAAGGGCAGGTTCT 20412 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | ||| |||||||||||||||| ||| || || |||| ||| Sbjct 20411 AACGCGTTATTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 20369 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || |||||||||| |||| ||||| Sbjct 20368 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAG 20325 >seq842 Length=174314 Score = 174 bits (192), Expect = 4e-41 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| |||||| || |||| ||||||||||||||| Sbjct 55733 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCGATATTGCTGGATCAGGCTTGCGCCC 55792 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| || | Sbjct 55793 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGG 55852 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| ||| || ||| ||| ||||| Sbjct 55853 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 55912 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 55913 CCAACTACCTAAT 55925 >seq1432 Length=54313 Score = 149 bits (164), Expect = 2e-33 Identities = 99/110 (90%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 |||||||| | || |||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 14530 GCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTC 14589 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 |||||||||||| |||||||||||||||||||| |||| |||||| ||| Sbjct 14590 CCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGT 14639 >seq392 Length=158512 Score = 122 bits (134), Expect = 2e-25 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || ||| || |||| ||| |||| ||||||| | ||| ||| | || Sbjct 51851 CCTTCTTCACTCATGCGATATTGCTGGATCCAGCTTATGCCCATTATCCAAGATTTCTCA 51792 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| |||||| | |||||||||||| || ||||||||| || ||| Sbjct 51791 CTGCTGCCCCCCGTGGGAGTCCGTGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 51732 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCAT 199 |||||||||| | ||| ||| || ||| ||| ||||| |||| || || | | ||| Sbjct 51731 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAAGTACCTTAACGCAT 51672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222317267968