Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq161 333 8e-89 seq2020 284 4e-74 seq842 268 3e-69 seq392 165 2e-38 seq1432 143 8e-32 seq790 82.4 2e-13 >seq161 Length=278270 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 192160 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 192219 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 192220 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 192279 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 192280 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 192339 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 192340 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 192399 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 192400 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 192459 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 192460 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 192501 >seq2020 Length=40899 Score = 284 bits (314), Expect = 4e-74 Identities = 270/343 (79%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || | |||||||||||| |||||||||| | Sbjct 20507 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGTTTACCAAGGCGATGATCAGTAGCTGGT 20566 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| || ||||| |||| | ||| ||||||||||||||||| Sbjct 20567 CCGAGAGGATGATCAGCCACACAGGGACTGATACACAGCCCAGACTCCTACGGGAGGCAG 20626 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||||||| || | |||||||||||||||||| ||||| || ||||| || || Sbjct 20627 TAGTGGGGAATTTTCCGCAATGGGCAAAAGCCTGACAGAGCAATGCTGCGTGGTGGAAGA 20686 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 || ||| |||||| | || ||| | | || ||||| |||||||||| || | | Sbjct 20687 AGACCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGAAAT 20746 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||| ||||||| ||||| ||| || ||| ||||||| Sbjct 20747 AAGCATCGGCTAACTCTGTGCCAGTAGCCGCGAAAATACAGAGGATGCAAGCATTATCCG 20806 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 20807 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 20848 >seq842 Length=174314 Score = 268 bits (296), Expect = 3e-69 Identities = 258/328 (79%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || || Sbjct 55925 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 55866 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 55865 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 55806 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| |||||||| || ||||| | | Sbjct 55805 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 55746 Query 346 TCGGGTCGTAAAGCTCTGTCCTC--AAGGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | |||||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 55745 TCCGCTCGTAAAGCTCTTTCGTCGAATGCGCGATCATGACATGACTCGAGGAAGAAGCCC 55686 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 55685 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 55626 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 || ||||||||||| |||||| |||| Sbjct 55625 CT-AGGCGTAAAGGGCACGTAGGCGGTT 55599 >seq392 Length=158512 Score = 165 bits (182), Expect = 2e-38 Identities = 238/334 (71%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 171 AGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTG 230 || || ||||| |||||| |||| |||||| ||| ||| |||| | || || | Sbjct 51680 AGGTACTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGGACG 51739 Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAAT 290 ||| |||||| || |||||||||||| | ||||| ||||| |||||||||| | ||| Sbjct 51740 ATCAGCCACACCGGGACTGAGACACGGCACGGACTCCCACGGGGGGCAGCAGTGAGAAAT 51799 Query 291 ATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCTTCG 348 ||| | |||||||| |||| ||| |||||| ||| |||| || ||||| ||| Sbjct 51800 CTTGGATAATGGGCATAAGCTGGATCCAGCAATATCGCATGAGTGAAGAAGGGTAATTCC 51859 Query 349 GGTCGTAAAGCTCTGTCCT--CAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 | |||||||||||| | | | | | | ||||| ||| ||||| ||||||| | Sbjct 51860 GCTCGTAAAGCTCTTTGGTTGAATGCGGGGTCATGACATGACTCGAGGAAGAAGCCCTAG 51919 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATAC---------GTAGGGGGCTAGCGTTATCCG 457 |||||| ||||| |||||||||||||| || | |||||| || ||| | | Sbjct 51920 CTAACTCCGTGCTAGCAGCCGCGGTAAAACGGGGGGGAGGGGGGGGGCAAGTGTTCTTCA 51979 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| ||| |||||||||| | |||| |||| Sbjct 51980 GAATGACT-AGGCGTAAAGGACACATAGGCGGTT 52012 >seq1432 Length=54313 Score = 143 bits (158), Expect = 8e-32 Identities = 100/114 (88%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250 |||||||||||||| |||||||||| | |||||||| ||||| |||||| ||| ||||| Sbjct 14643 GCTTACCAAGGCGATGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGA 14584 Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC 304 |||||| ||| |||||||||||||||||||||||||||| || | |||||||| Sbjct 14583 TACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGC 14530 >seq790 Length=159370 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/119 (76%), Gaps = 8/119 (7%) Strand=Plus/Plus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||||||||| ||||||||||| |||| Sbjct 46979 AATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGC-------ATACA 47031 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 ||| || ||||||||||||||| | | |||||||||| || |||||||| || ||| Sbjct 47032 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTA 47089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497498642432