Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq161 277 4e-72 seq2020 214 4e-53 seq842 205 2e-50 seq392 120 7e-25 seq45 102 2e-19 seq790 77.0 8e-12 >seq161 Length=278270 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 192392 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 192451 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 192452 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 192511 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 192512 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 192571 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 192572 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 192631 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 192632 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 192691 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 192692 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 192750 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 192751 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 192795 >seq2020 Length=40899 Score = 214 bits (236), Expect = 4e-53 Identities = 287/397 (72%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||| ||||||| ||||| ||| || ||| ||||||| Sbjct 20747 AAGCATCGGCTAACTCTGTGCCAGTAGCCGCGAAAATACAGAGGATGCAAGCATTATCCG 20806 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || ||||||| | | ||| | | || Sbjct 20807 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCTGGCATCAAATCCAAGGG 20866 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || ||| | |||||| | ||| |||| ||| ||||||| ||||| Sbjct 20867 CTCAACCCTGGACAGGCTGTGGAAACTACCAAGCTTGAGTACAGTAGGGGCAGAGGGAAT 20926 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||| | ||||| || | | ||| |||| ||| || | | Sbjct 20927 TTCCGGTGGAGCGGTGAAAGGTGTAGAGATCGGAAAGAATACCAACGGCAAAATCACTCT 20986 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| ||| |||||||||||| |||| || ||||||| || ||||||||||||| Sbjct 20987 GCTGGGCTGACACTGACACTGAGAGACGAAGGCTAGGGGAGCGAATGGGATTAGATACCC 21046 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| |||||||| || ||| |||| | | | ||| || | | | ||| Sbjct 21047 CAGTAGTCCTAGCCGTAAATGACTGATATTAGGCG-CTGTGCGTATCGACCCGTGCAGTG 21105 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || ||| || ||||||| || ||||||| ||| Sbjct 21106 CTGTAGGTAACACATTAAGTATCCCGCCTGGGGGGTA 21142 >seq842 Length=174314 Score = 205 bits (226), Expect = 2e-50 Identities = 251/338 (74%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 55702 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 55643 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| |||| | || | ||| Sbjct 55642 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 55583 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 55582 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 55526 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| ||| | | |||||| ||| | Sbjct 55525 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 55466 Query 241 CGAAGGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| || || || | || ||| ||| | ||||||| |||| ||| ||| Sbjct 55465 CGAAGGCAGCTCTCTGGGTCTCT-ACCGACGCTGGTGTGCGAAAGCATGGGTAGCGAACG 55407 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 55406 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 55369 >seq392 Length=158512 Score = 120 bits (132), Expect = 7e-25 Identities = 237/348 (68%), Gaps = 17/348 (5%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG--- 58 ||| ||||| ||||||| ||||||| ||||| |||||||||||||| ||| |||| Sbjct 51900 ACTCGAGGAAGAAGCCCTAGCTAACTCCGTGCTAGCAGCCGCGGTAAAACGGGGGGGAGG 51959 Query 59 ------GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 112 || || ||| | | |||| ||| |||||||||| | |||| |||| | | Sbjct 51960 GGGGGGGCAAGTGTTCTTCAGAATGACTAGGCGTAAAGGACACATAGGCGGTTCATGGGG 52019 Query 113 TCAGAGGTGAAAGGCTATGGCTCAACCCCGGGAC--TGCTTTTGAAACTGCAGGGCTAGA 170 | | ||||||| | | ||| || | |||||| ||||| | || || Sbjct 52020 TTGAAAGTGAAAGTCA----CCAAACAGTGGCATAATGCTTTCGAAACCACTAAACTTGA 52075 Query 171 GTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGA 230 ||| || || |||| |||| | ||| || |||||| | | ||| | | |||| Sbjct 52076 GTGAGACAGAGGAGAGTGCAATTTCGTGTGGAGGGGTGAACTCTATGGATCTACGAAGGA 52135 Query 231 ACACCAGTGGCGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGG 289 | || | |||||| ||| |||| || || | || ||| | | ||||| ||| Sbjct 52136 ATGACAAAAGTGAAGGCAGCTCTCTGGGTCTCTACCA-ACGCTGGTGTGCAAAAGCATGG 52194 Query 290 GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 52195 ATAGCAAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 52242 Score = 96.9 bits (106), Expect = 8e-18 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 147 TGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGG 206 |||||| ||||| | || ||||| || || ||||||||| | ||| || || Sbjct 52500 TGCTTTCGAAACCACTAAACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGGAGGGG 52559 Query 207 TGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA-CTGTAAC 265 |||| | | ||| | | ||||| ||| | |||||| ||| |||| || || | Sbjct 52560 TGAACTCTATGGATCTACGAAGGAATGCCAAAAGTGAAGGCAGCTCTCTGGGTCTCTACC 52619 Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 ||| ||| | | ||||| ||| ||||||| ||||||||||||||||||||||| || Sbjct 52620 -GACGCTGGTGTGCAAAAGCATGGATAGCAAACGGGATTAGATACCCTGGTAGTCCATGC 52678 Query 326 CGTAAACGATGA 337 |||||||||||| Sbjct 52679 CGTAAACGATGA 52690 >seq45 Length=496881 Score = 102 bits (112), Expect = 2e-19 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 |||||||| | ||| || ||| |||| ||| | | |||||| ||| |||||| Sbjct 1152 GTGGAATTTCGTGTGGAGGGGTAAAATCTACGGATCTACGAAGGAACGCCAAAAGCGAAG 1211 Query 246 GCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || ||| |||| || || | ||| ||| | ||||||| |||| ||| ||| ||||| Sbjct 1212 GCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCATGGGTAGCGAACGGGATT 1270 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||||||||| Sbjct 1271 AGATACCCTGGTAGTCCATGCCGTAAACGATGA 1303 >seq790 Length=159370 Score = 77.0 bits (84), Expect = 8e-12 Identities = 80/106 (75%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||| |||| ||| || ||| Sbjct 46991 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGC-------ATACAGAGGATGCAAGC 47043 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 110 |||||||||||| | ||||||||||| || |||||||| || ||| Sbjct 47044 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTA 47089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203118567424