Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2278 320 3e-85 seq298 320 3e-85 seq717 228 2e-57 seq565 113 9e-23 >seq2278 Length=30574 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 22887 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 22832 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 22831 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 22772 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 22771 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 22713 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 22712 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 22654 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 22653 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 22594 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 22593 GTCCCTGCCCTTTGTA 22578 >seq298 Length=195704 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 126243 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 126298 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 126299 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 126358 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 126359 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 126417 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 126418 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 126476 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 126477 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 126536 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 126537 GTCCCTGCCCTTTGTA 126552 Score = 275 bits (304), Expect = 1e-71 Identities = 221/263 (84%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || ||||||||||||||||||| | | | || | | | ||| ||||||||||||||||| Sbjct 136082 GCAGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGTAAGCTTGAGGCAATAACAGGT 136141 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||| Sbjct 136142 CTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGCGCTACACTGATGTATTCAATGAGTT 136201 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| | | | |||||||||| | ||| | || || ||||||| || Sbjct 136202 CA-CACCTTGGCCGACATGCCCGGGTAATCTT-TGAAATTTCATCATGATGGGGATCGAT 136259 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| | |||| |||||| ||||||||| ||||| Sbjct 136260 CATTGCAATTGTTGGTCTTCAACGAGGAATTCTTAGTCAGCGCGAGTCATCAGCTCGCGT 136319 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 136320 TGACTACGTCCCTGCCCTTTGTA 136342 Score = 273 bits (302), Expect = 4e-71 Identities = 223/266 (84%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGG---ACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACA 122 ||||||||||||||||| ||||| | | | || | | |||||||||||||||||||| Sbjct 114350 GCCGGCTTCTTAGAGGGGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACA 114409 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||||||||||||| |||||||| | | |||||||||||||| | |||||| Sbjct 114410 GGTCTGTGATGCCCTTAGATATTCTGGGCTGTATGCGCGCTACACTGATGTATTCAACGA 114469 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 ||||| ||||||||||| ||| | |||||||||| | ||| | ||||| || ||||| Sbjct 114470 GTTCA-CACCTTGGCCGATAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGTGGATA 114527 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||||| ||| ||||||||||||||| |||||||||| | ||||||||| | Sbjct 114528 GATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCATGAGTCATCAGCTCA 114587 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||||||||| Sbjct 114588 CGTTGACTACGTCCCTGCCCTTTGTA 114613 Score = 264 bits (292), Expect = 2e-68 Identities = 219/262 (84%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||||||| | | | || | ||||||| |||| |||||||||| Sbjct 137879 GCCAGCTTCTTAGAGGGACTATGGCCGTTTAGGTCAAGGAAGTTCGAGGTAATAACAGGT 137938 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 137939 CTGTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTT 137998 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | ||||||||||| ||| | |||||||| | ||| | ||||| |||||||||| Sbjct 137999 TA-CACCTTGGCCGACAGGCCCAAGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA- 138055 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 138056 TATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 138115 Query 306 TGATTACGTCCCTGCCCTTTGT 327 ||| || ||||||| ||||||| Sbjct 138116 TGACTATGTCCCTGTCCTTTGT 138137 >seq717 Length=192076 Score = 228 bits (252), Expect = 2e-57 Identities = 209/263 (79%), Gaps = 16/263 (6%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||| | | | || | | |||||||||||| |||||||||| Sbjct 161348 GCCGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGTAATAACAGGT 161289 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||| |||| | |||||||||| ||||| ||||||| | ||||||||| Sbjct 161288 CTGTGATGCCCTTTGATGCTATGGGCCGCACACGCGCAACACTGATGTATTCAACGAGTT 161229 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| ||||| | |||||||| | ||| | ||||| |||||||||| Sbjct 161228 CA-CACCTTGGCCGTCAGGTCCGAGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 161171 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||||||||||||| | |||||||| ||||| Sbjct 161170 CATTGCAATTGTTGGTCTTCAACGAGGAAATC-------------ATCATCAGCTCGCGT 161124 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||| || |||||||||||| Sbjct 161123 TGACTACATCGCTGCCCTTTGTA 161101 >seq565 Length=200466 Score = 113 bits (124), Expect = 9e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || || ||| |||||| |||||||||| ||| ||||||||||||||| ||| ||| | Sbjct 134182 TCATGATGGAGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTTCTAAAAAGTGG 134123 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| ||||||||||||||| |||||||||||| Sbjct 134122 GAGTCATCAGCTCGCGTTGATTACGTCTCTGCCCTTTGTA 134083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947135893504