Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq161 127 4e-27 seq842 111 3e-22 seq2020 89.7 1e-15 seq1432 89.7 1e-15 seq392 75.2 2e-11 >seq161 Length=278270 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 192428 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 192380 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 192379 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 192327 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 192326 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 192267 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 192266 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 192207 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 192206 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 192168 >seq842 Length=174314 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| || Sbjct 55751 CCTTCTTCACTCACGCGATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 55810 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| || ||||| || | ||| Sbjct 55811 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 55870 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 55871 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTAC 55930 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 55931 GCAGGCTCATCAAACAGCG 55949 >seq2020 Length=40899 Score = 89.7 bits (98), Expect = 1e-15 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| | ||| ||| ||||| | | ||| |||| || Sbjct 20712 AAAAGAAGTTCAGGACCCGTAGGTC-TTCTTCCACCACGCAGCATTGCTCTGTCAGGCTT 20654 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||| ||||||||||||||||| ||| | |||| |||| Sbjct 20653 TTGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCTGTGTATCAG 20594 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | || ||||| || | ||||||| || | ||| ||| | | || ||| | || Sbjct 20593 TCCCTGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAACTATT 20534 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 20533 GCCTCACCAACTAGCTAAT 20515 >seq1432 Length=54313 Score = 89.7 bits (98), Expect = 1e-15 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||||||||||||||||| ||| |||||| ||||| || Sbjct 14532 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTCCC 14591 Query 205 AATGTGGGGGACCTTCCTCTCAGA 228 | ||||| || | |||||||||| Sbjct 14592 AGTGTGGCTGATCATCCTCTCAGA 14615 >seq392 Length=158512 Score = 75.2 bits (82), Expect = 2e-11 Identities = 112/159 (70%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 ||||| |||| ||| |||||||||||| ||||| ||||| | |||||||||||| || Sbjct 51811 CCATTATCCAAGATTTCTCACTGCTGCCCCCCGTGGGAGTCCGTGCCGTGTCTCAGTCCC 51752 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 ||||| || | ||| ||| | ||| |||| | |||| ||| ||| ||||| Sbjct 51751 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 51692 Query 265 CGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 || | ||||| ||||||| | |||| ||| || Sbjct 51691 AACCAAGTACCT----TAACGCATGCTCATCAAACAGCG 51657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068727663616