Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2278 107 3e-21 seq298 107 3e-21 seq349 102 1e-19 seq717 98.7 2e-18 seq5754 82.4 1e-13 seq4433 80.6 4e-13 >seq2278 Length=30574 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 18816 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 18759 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 18758 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 18699 Query 121 GAA 123 ||| Sbjct 18698 GAA 18696 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 14844 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 14787 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 14786 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14733 >seq298 Length=195704 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 130368 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 130425 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 130426 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 130485 Query 121 GAA 123 ||| Sbjct 130486 GAA 130488 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 173955 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 173898 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 173897 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 173838 Query 121 GAA 123 ||| Sbjct 173837 GAA 173835 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| ||| || ||| || |||| Sbjct 86450 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCAACGCGCTTGGTTGAAAAGCCAGT 86393 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||| |||||||||||||||||| || | Sbjct 86392 GGCGCGAAGCTACCGTGCGCTGGATTATGAATGAATGCCTCTAAGTCAGAATCCGGGCTA 86333 Query 121 GAA 123 ||| Sbjct 86332 GAA 86330 Score = 73.4 bits (80), Expect = 6e-11 Identities = 98/129 (76%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCT-GTCTGACCAGGC-A 58 ||||||| ||||||| || ||| | | ||||||| | |||||| | ||| || | | Sbjct 118928 GTACGAGGGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGGCTTGGTTGAAAAGCCGA 118985 Query 59 GTGCCGCGAAG--CTACCAT--CTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||| | |||| ||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 118986 GTGGCACGAAAGCCTACCTGTGCGGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 119045 Query 115 ATGCCAGAA 123 || |||| Sbjct 119046 GGGCTAGAA 119054 >seq349 Length=145398 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1237 GTACAAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1180 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||| ||||||||||||||||||||||||| || | Sbjct 1179 GGCGCGAAGCTACCGTGCGCTGGATTATAACTGAACGCCTCTAAGTCAGAATCCAGGCTA 1120 Query 121 GAA 123 ||| Sbjct 1119 GAA 1117 >seq717 Length=192076 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | ||||||| | ||| || ||| || |||| Sbjct 154981 GTACGAGAGGAACCGTTGA-TTC-GCGCAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 154924 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||| |||||||||||||||||| || | Sbjct 154923 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 154864 Query 121 GAA 123 ||| Sbjct 154863 GAA 154861 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| | |||| Sbjct 171412 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAATGCCAGT 171355 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||| | |||||||||||| || ||||||||||||||||||||| || | Sbjct 171354 GGCGCAAAGCTACCGTGTGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCTA 171295 Query 121 GAA 123 ||| Sbjct 171294 GAA 171292 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 157175 GTACGAGAGAAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 157118 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||| ||||||| | ||||||||||| ||||||||||||||||||| |||| Sbjct 157117 GGCGCAAAGCTACTGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGTATCC 157064 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| ||||| || ||| || |||| Sbjct 173901 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 173844 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||| | | | |||||| |||||||||||||||||||||||| Sbjct 173843 GGTGAGAAGCTACCGTGCGTTAGATTATAACTGAACGCCTCTAAGTCAGAATCC 173790 Score = 84.2 bits (92), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 153332 GTATGAGAGGAACCGTTGA-TTC-GTACAATTGGTCATCGCGTTTGGTTGAAAAGCCAGT 153275 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 | |||||||||||| | ||||||||||| ||||||||||||||| Sbjct 153274 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAG 153230 >seq5754 Length=1431 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 |||||||| | ||| || ||| || ||||| ||||||||||| | | |||||||| Sbjct 3 AATTGGTTATCGCGCTTGGTTGAAAAGCCAGTGGTGCGAAGCTACCGTGCGTTGGATTAT 62 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||||||||||||| || |||| Sbjct 63 TACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAA 97 >seq4433 Length=5497 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | ||| | | ||||||| | ||| || | | | |||| Sbjct 166 GTACGAGAGGAACCATTGC-TTC-GCACAATTGGTCATCGCGCTTGGTTAAAAAACCAGT 223 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||| |||| | ||| |||||||| ||||| |||||||||||||||||| || | Sbjct 224 GGCGCGAAGTTACCGTGTGCCGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 283 Query 121 GAA 123 ||| Sbjct 284 GAA 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819146289152