Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq69 174 1e-38 seq146 138 9e-28 >seq69 Length=847923 Score = 174 bits (192), Expect = 1e-38 Identities = 372/547 (68%), Gaps = 13/547 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| ||||| || || ||||||| |||||| |||||| | || | ||| Sbjct 356489 ATGTACAAGAAGGCCGAAGCATCGTTTTGGACGGCGGAGGAAGTCGATCTATCTCAGGAC 356548 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||||| | | | ||| ||| || | || ||||| ||||| || | || Sbjct 356549 GGTCGCGACTGGGAGAATCTCAACGA-CGGCGAGCGGCACTTCATCAAACACGTCCTCGC 356607 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| |||||| | || ||| | || Sbjct 356608 CTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCTCGCTTCTCGATTCATGTCCGA 356667 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| |||||||||||| ||||||||| |||||||| || || ||||| |||| Sbjct 356668 TGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCGATCGAGAACATCCA 356727 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||||||| | ||| |||| || ||||||| ||| ||| | || | Sbjct 356728 TTCCGAGATGTACAGTCTCCTCCTCGACACTTACATCAAGGACAACAAGGAGAGAGACCA 356787 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTT 61451 |||| || ||||| || || || ||| | ||| ||| ||| | ||||| | Sbjct 356788 TCTGTTTCGCGCAATCGAAACCATCCCTTGCGTCGCGAA---GAAGGCGCAGTGGGCGAT 356844 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 | |||||| | | | | || || | || || | | || || || || Sbjct 356845 GACGTGGATCGACGG---ATCCCAGACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGT 356901 Query 61512 CGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 ||| || | || ||| || | | | || | | || || ||| |||||||||| || | Sbjct 356902 CGAAGGCATCTTCTTCTCCGGTAGCTTCTG-CTCGATTTTCTGGCTGAAGAAACGCGGGC 356960 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || || |||||| ||| |||||||| || || ||||| ||| |||| || | Sbjct 356961 TCATGCCGGGACTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGCTTGCACTGCG 357020 Query 61631 ATTTTGC 61637 |||| || Sbjct 357021 ATTTCGC 357027 >seq146 Length=264749 Score = 138 bits (152), Expect = 9e-28 Identities = 544/844 (64%), Gaps = 19/844 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || |||||||| |||||||| | || || |||||| | || | || Sbjct 121534 ATGTACAAGAAAGCCGAAGCTTCTTTCTGGACCGCCGAAGAAGTCGATCTATCTCAGGAT 121475 Query 61156 ATGAATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 |||||||| || | | ||| || |||| || ||| | || || || | Sbjct 121474 TACCGCGACTGGGAAAAAGCCCTAAACGA-CGACGAACGGCACTTCGTCAAGCACGTCCT 121416 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| ||||| |||||| ||| || ||| | Sbjct 121415 CGCTTTCTTCGCCGCATCTGACGGAATCGTTCTGGAGAATCTATCTTCCCGGTTCATGTC 121356 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| || ||||| ||| |||||||| |||||||| || || |||||| | Sbjct 121355 CGATGTTCAAGTCTCCGAGGCTCGTGCCTTCTACGGATTCCAGATCGCGATCGAGAATAT 121296 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 ||||| |||||||||||| | || ||||||| ||||||| || || | || Sbjct 121295 TCACTCCGAGATGTACAGTCTCCTTCTCGATACCTACATCAAAGACAACAAAGAGAGAGA 121236 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCC 61449 | | ||| || ||||| || || || | | | ||| ||| ||| ||||| Sbjct 121235 TCATCTCTTCCGCGCAATCGAAACCATTCC--CTGCGTCGCGAAAATGGCGCGATGGGCG 121178 Query 61450 TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 | || |||||| | | | | | || | |||||| | |||| || || Sbjct 121177 ATGAAATGGATCGACGG---ATCTCAGAGCTTCGCTGAACGTATCGTGGCTTTCGCTTGC 121121 Query 61510 GTCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 ||||| ||| | || ||| || | | | || | | || || ||| |||||||||| || Sbjct 121120 GTCGAAGGTATCTTCTTCTCCGGTAGCTTCTG-CTCGATTTTCTGGCTGAAGAAACGAGG 121062 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 | ||||| || || || ||| ||| || ||||| || || ||||| ||| | || || Sbjct 121061 TTTAATGCCTGGGCTCACTTTCTCCAACGAATTGATCTCGCGAGACGAAGGCCTTCACTG 121002 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||| ||| |||| | | || | | || ||| | || | || || || || Sbjct 121001 CGATTTCGCTTGTTTGATCTACAGTCTCCTTCGATCGAAGC-TCAG--CGAAGATCGAGT 120945 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | ||| |||||||| ||||| ||||| || ||| || ||||| | || Sbjct 120944 GAAATCGATCGTTCGTGATGCGGTCGAGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCC 120885 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | | | || ||||| ||| | ||| ||||| || ||||| || || || Sbjct 120884 TTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTACATCGAATTCGTGGCGGA 120825 Query 61809 -CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 | || | ||| ||||||| | || | || | || || || ||||||| Sbjct 120824 TCGGTTACTGGGTGCGCTTGGGTACGGTAAGG-TGTACGGTGTGACTAATCCGTTTGATT 120766 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| |||||||||| | || || || || || |||||||| | || || || | Sbjct 120765 GGATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTCTTCGAGAAGAGAGTCGGTGAGT 120706 Query 61928 ATCA 61931 |||| Sbjct 120705 ATCA 120702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397535206603520