Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq161 637 5e-178 seq352 302 5e-77 seq768 136 4e-27 seq17 118 1e-21 >seq161 Length=278270 Score = 637 bits (706), Expect = 5e-178 Identities = 721/966 (75%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| || | ||| | |||||| Sbjct 90938 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 90879 Query 159890 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 159949 | || || |||| ||||| |||||||| || || || || ||||| || |||||| Sbjct 90878 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 90819 Query 159950 CCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCT 160009 || || |||| || || | ||||| ||||| || || || ||||| || |||| | Sbjct 90818 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACC 90759 Query 160010 TCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGG 160069 || || |||||| | || || || || || |||||||| ||||| | || || ||| Sbjct 90758 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 90699 Query 160070 CTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCC 160129 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 90698 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 90639 Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 |||||||||||||| |||||||| || |||||| ||||||||||| ||||| |||| Sbjct 90638 TATATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 90579 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| ||||||| ||| | ||||||| | ||||| Sbjct 90578 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 90519 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || ||| || |||| ||||||||| || |||||||||||||| |||| |||| ||||| Sbjct 90518 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 90459 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||| || || ||||| || |||||||| || || |||||| | ||||| ||||| ||| Sbjct 90458 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 90399 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGA 160429 ||||| || || || || |||||||||||| || |||| ||||||||| | | || Sbjct 90398 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 90339 Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || ||||||| ||| || || | ||||||| ||||||||||| ||||| ||| Sbjct 90338 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 90279 Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549 |||||||| || || || ||||| || || || || ||||||||||||||||| || Sbjct 90278 TACAACATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 90219 Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTC 160609 |||||||| || ||| | || |||||| | || |||||||| || || || || ||||| Sbjct 90218 AACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 90159 Query 160610 ACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCC 160669 ||||| | ||| || || ||||| ||||| || ||||||||||| |||||||| || Sbjct 90158 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 90099 Query 160670 ATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGT 160729 | | || | ||||||| ||| | || |||||||| || | ||||||| ||| Sbjct 90098 GTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 90039 Query 160730 CTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 || || |||||||| ||||| || ||||| |||||||| |||||||| ||||| |||||| Sbjct 90038 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGCT 89979 Query 160790 GCTGAG 160795 | |||| Sbjct 89978 GTTGAG 89973 Score = 547 bits (606), Expect = 7e-151 Identities = 721/993 (73%), Gaps = 5/993 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || ||||| ||| ||| | ||| Sbjct 122112 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 122171 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | || Sbjct 122172 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 122231 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || |||||| ||||| ||| | | Sbjct 122232 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 122291 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | |||||| || || || || ||||||||||| || ||||| ||||| | || Sbjct 122292 TTAGCGCATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 122350 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843 | ||| | || || || ||| |||||| || |||||||| |||||||| | || || Sbjct 122351 GTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 122410 Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902 || ||| | ||||| ||||||||||| || ||| || | | || ||||| ||||| | Sbjct 122411 TTTTATGTTACGTCAATTTGAACTTGCCCGATCTGTTCAAT-TGCGACCTTATAATGCAA 122469 Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962 | || ||||||||||| |||||||||||||| ||||| || || ||||| || || | Sbjct 122470 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTC 122529 Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022 | || |||||||| ||||| ||||| || || ||||| || | ||| | || | Sbjct 122530 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCT 122589 Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082 | | ||||| || || |||||||| | || ||||| || |||||||| ||||| || Sbjct 122590 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCGTTTCATATGATGGGAGTCGCCGGCG 122649 Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142 | |||| | ||| |||| | |||||||| |||| ||||| ||||| || | | Sbjct 122650 TACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 122709 Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| |||||||| ||| |||||| || | || |||| || || |||| Sbjct 122710 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 122769 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 | || ||||| || || ||||| || |||||||| ||||| || |||||||| |||| Sbjct 122770 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 122829 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 122830 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 122889 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | || | | || || ||| | || || ||||| || ||||| || || ||||| || | Sbjct 122890 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 122949 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 |||||||||| ||||| |||||||| || ||||| || || ||||| || || || |||| Sbjct 122950 GTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 123009 Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502 || ||||||| ||| |||| | ||||| || ||||| ||| || |||||||||||| Sbjct 123010 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 123069 Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | ||||| || | || ||||| || | ||||| Sbjct 123070 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 123101 >seq352 Length=147189 Score = 302 bits (334), Expect = 5e-77 Identities = 359/488 (74%), Gaps = 13/488 (3%) Strand=Plus/Minus Query 160308 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGG 160367 ||||||| || || ||||| || |||||||| || || |||||| | ||||| ||||| | Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 160368 TATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCA 160427 |||| || || || || || |||||||||||| || |||| |||| |||| | ||| Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCA 89209 Query 160428 GAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGA 160487 | || || ||||||| ||| || || | ||||||| ||||||||||| ||||| | Sbjct 89208 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAA 89149 Query 160488 CTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 160547 |||||||||| || || || ||||| || || || || |||||||||| | Sbjct 89148 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTT 89098 Query 160548 TTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGT 160607 | ||||| || || ||| | || |||||| | || |||||||| || || || || |||| Sbjct 89097 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 89038 Query 160608 TCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGT 160667 | ||||| | ||| || || ||||| ||||| || ||||||||||| |||||||| | Sbjct 89037 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 88978 Query 160668 CCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTG 160727 | | | || | |||| ||| | || |||||||| || | ||||||| ||| Sbjct 88977 CAGTAGTTGATAGTCAAG----TGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 88922 Query 160728 GTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTG 160787 | || |||||||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct 88921 ACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTG 88862 Query 160788 CTGCTGAG 160795 ||| |||| Sbjct 88861 CTGTTGAG 88854 >seq768 Length=145301 Score = 136 bits (150), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || ||| | || || ||||| || ||||| || || ||||| ||||||||||||| Sbjct 42072 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAACTTCGTGCAGCGGAA 42131 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 ||| |||||| |||| ||||| || || ||||| || || || |||||| |||||| Sbjct 42132 AATCTAGAATTTAAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGTT 42191 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| |||| | ||||| || ||||| ||| || |||||| |||||||||||| || Sbjct 42192 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCTTGAGGAAGTTCTACCA 42251 Query 162514 AGAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 42252 CGTGGAAACGCTCT-TTAATGG 42272 >seq17 Length=826286 Score = 118 bits (130), Expect = 1e-21 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||| || || ||||| || | || || ||||| || ||||||||| Sbjct 68759 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATCTGCCTTACTCTTGCCGTGCTGGT 68818 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | ||||| ||||| ||| | ||| |||| || || ||||| || | Sbjct 68819 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 68878 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| ||||||||||| | | ||||||||| || || || | |||||||| ||| Sbjct 68879 TTCCTCGATGATGATCAGATCGGCGAAGGATTTGTTCTCACTTGTGCGGCTTATCCTACT 68938 Query 161149 TCTGATGTAACTATTCTTGCCGAGCAAGAAGAGTCTCTTTACTAAAAACCT----TTTTA 161204 |||||||| || ||| || | ||||||| || ||||||| || |||| Sbjct 68939 TCTGATGTTACCATTGAGACCCACAAAGAAGAAGACATTGTCTAAAAAGCTTAGCTTTTT 68998 Query 161205 TTATGA 161210 |||||| Sbjct 68999 TTATGA 69004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551329353590400