Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1 284 2e-74
seq20800 224 1e-56
seq7 199 6e-49
seq5 170 3e-40
seq3 116 6e-24
seq4 77.0 5e-12
>seq1
Length=28142018
Score = 284 bits (314), Expect = 2e-74
Identities = 206/236 (87%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT----TGATGACTCGCGCTTACTAGGAA 56
||| |||||||| | | |||||||| ||||| ||||||||| |||||| ||||||
Sbjct 1426327 GTATAAAGGGCATGAAAGTAGTCAATGCGAGTCATGCTGATGACTCACGCTTATTAGGAA 1426386
Query 57 TTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG 116
|| |||| ||||||| |||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1426387 TT-CCTCATTGAAGATCAACAACTGCAATGATCTATTCCCATCATGATGAAATTTCAAAG 1426445
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
|||| |||| ||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1426446 ATTAGCCGGGCCTGTAAGCCAAGGC--TAGACTCGTTGAATACATCAGTGTTGCGCGCGT 1426503
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232
|||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 1426504 GCGGCCCAGAACATCTAAGGACATCACAAACTTGTTATTGCCTCAAACTTCCGTGG 1426559
Score = 147 bits (162), Expect = 3e-33
Identities = 99/111 (89%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 134 GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193
||||||| |||||||||||||||||||||| ||||||| ||||| ||| ||||||||||
Sbjct 12274231 GCCAAGGCTATAGACTCGTTGAATACATCAGCGTAGCGCACGTGCAGCCAAGAACATCTA 12274290
Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244
||||||||||||||||||||||||||||||||| ||| || || |||||
Sbjct 12274291 AGGGCATCACAGACCTGTTATTGCCTCAAACTTTCGTCACCGAAGCGGCCA 12274341
>seq20800
Length=619
Score = 224 bits (248), Expect = 1e-56
Identities = 139/146 (95%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 151 GTACAAAGGGAAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 94
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 93 CTCGTTGAAGACCAACAATTGTAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 34
Query 121 CCCGGACCTGTCGGCCAAGGTGATAG 146
||||| |||||||||||||| ||||
Sbjct 33 CCCGGGCCTGTCGGCCAAGGCTATAG 8
>seq7
Length=30551617
Score = 199 bits (220), Expect = 6e-49
Identities = 149/172 (87%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| |||| ||||| ||||||||| || ||||| ||||||||||| || |
Sbjct 23272119 GTACAAAGGGCATGGACATAGTCGACGCGAGCTA-ATAACTCGTGCTTACTAGGAGTT-C 23272176
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 23272177 TTCGTTGAAGACCAATAATCACAATGATTTATCCCCATCACGATGAAATTTCAAAGATTA 23272236
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172
| |||||||| | | |||| ||||||||||| ||||||||||||||| ||
Sbjct 23272237 CTCGGACCTGCCAGTGAAGGCTATAGACTCGTTAAATACATCAGTGTAGTGC 23272288
>seq5
Length=15272566
Score = 170 bits (188), Expect = 3e-40
Identities = 113/123 (92%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 4657827 GTACAAAGGGCGGGGACGTGGTCAACGCGAGCT-GATGACTCGCGCTTGCTAGGAATTTC 4657885
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|| ||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 4657886 -TCATTGGAGACCAACAATCGCAATGATTTATCCTCATCACGATGAAATTTCAAAGATTA 4657944
Query 121 CCC 123
|||
Sbjct 4657945 CCC 4657947
Score = 105 bits (116), Expect = 1e-20
Identities = 73/80 (91%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|| ||||||||||||| ||||||||| ||||| |||| |||||||||||||| |||| ||
Sbjct 7962091 TAGAAAGGGCAGGGACATAGTCAACGAGAGCT-GATGGCTCGCGCTTACTAGAAATT-CC 7962148
Query 62 TCGTTGAAGACCAACAATTG 81
||||||||||||||||||||
Sbjct 7962149 TCGTTGAAGACCAACAATTG 7962168
>seq3
Length=31061273
Score = 116 bits (128), Expect = 6e-24
Identities = 76/81 (94%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 27041514 GTACAAAGGGCAGGGATGTAGTCAACGTGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 27041571
Query 61 CTCGTTGAAGACCAACAATTG 81
||| |||||||||||||||||
Sbjct 27041572 CTCATTGAAGACCAACAATTG 27041592
>seq4
Length=28907061
Score = 77.0 bits (84), Expect = 5e-12
Identities = 56/61 (92%), Gaps = 3/61 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCG-CTTACTAGG-AATT 58
||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||| ||||
Sbjct 7486155 GTACAAAAGGCAGGGACGTAGTCAACGCAAGC-TGATGACTCGCGACTTACTAGGTAATT 7486213
Query 59 T 59
|
Sbjct 7486214 T 7486214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751715513465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |