Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 284 2e-74 seq20800 224 1e-56 seq7 199 6e-49 seq5 170 3e-40 seq3 116 6e-24 seq4 77.0 5e-12 >seq1 Length=28142018 Score = 284 bits (314), Expect = 2e-74 Identities = 206/236 (87%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT----TGATGACTCGCGCTTACTAGGAA 56 ||| |||||||| | | |||||||| ||||| ||||||||| |||||| |||||| Sbjct 1426327 GTATAAAGGGCATGAAAGTAGTCAATGCGAGTCATGCTGATGACTCACGCTTATTAGGAA 1426386 Query 57 TTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG 116 || |||| ||||||| |||||| ||||||||||||| ||||||| ||||||||||||||| Sbjct 1426387 TT-CCTCATTGAAGATCAACAACTGCAATGATCTATTCCCATCATGATGAAATTTCAAAG 1426445 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| |||| ||||| ||||||| |||||||||||||||||||||||| |||||||| Sbjct 1426446 ATTAGCCGGGCCTGTAAGCCAAGGC--TAGACTCGTTGAATACATCAGTGTTGCGCGCGT 1426503 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 |||||||||||||||||||| ||||||| || |||||||||||||||||||||||| Sbjct 1426504 GCGGCCCAGAACATCTAAGGACATCACAAACTTGTTATTGCCTCAAACTTCCGTGG 1426559 Score = 147 bits (162), Expect = 3e-33 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 134 GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 ||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct 12274231 GCCAAGGCTATAGACTCGTTGAATACATCAGCGTAGCGCACGTGCAGCCAAGAACATCTA 12274290 Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 ||||||||||||||||||||||||||||||||| ||| || || ||||| Sbjct 12274291 AGGGCATCACAGACCTGTTATTGCCTCAAACTTTCGTCACCGAAGCGGCCA 12274341 >seq20800 Length=619 Score = 224 bits (248), Expect = 1e-56 Identities = 139/146 (95%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 151 GTACAAAGGGAAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 94 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 93 CTCGTTGAAGACCAACAATTGTAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 34 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG 146 ||||| |||||||||||||| |||| Sbjct 33 CCCGGGCCTGTCGGCCAAGGCTATAG 8 >seq7 Length=30551617 Score = 199 bits (220), Expect = 6e-49 Identities = 149/172 (87%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| ||||| ||||||||| || ||||| ||||||||||| || | Sbjct 23272119 GTACAAAGGGCATGGACATAGTCGACGCGAGCTA-ATAACTCGTGCTTACTAGGAGTT-C 23272176 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 23272177 TTCGTTGAAGACCAATAATCACAATGATTTATCCCCATCACGATGAAATTTCAAAGATTA 23272236 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 | |||||||| | | |||| ||||||||||| ||||||||||||||| || Sbjct 23272237 CTCGGACCTGCCAGTGAAGGCTATAGACTCGTTAAATACATCAGTGTAGTGC 23272288 >seq5 Length=15272566 Score = 170 bits (188), Expect = 3e-40 Identities = 113/123 (92%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||| Sbjct 4657827 GTACAAAGGGCGGGGACGTGGTCAACGCGAGCT-GATGACTCGCGCTTGCTAGGAATTTC 4657885 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 4657886 -TCATTGGAGACCAACAATCGCAATGATTTATCCTCATCACGATGAAATTTCAAAGATTA 4657944 Query 121 CCC 123 ||| Sbjct 4657945 CCC 4657947 Score = 105 bits (116), Expect = 1e-20 Identities = 73/80 (91%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || ||||||||||||| ||||||||| ||||| |||| |||||||||||||| |||| || Sbjct 7962091 TAGAAAGGGCAGGGACATAGTCAACGAGAGCT-GATGGCTCGCGCTTACTAGAAATT-CC 7962148 Query 62 TCGTTGAAGACCAACAATTG 81 |||||||||||||||||||| Sbjct 7962149 TCGTTGAAGACCAACAATTG 7962168 >seq3 Length=31061273 Score = 116 bits (128), Expect = 6e-24 Identities = 76/81 (94%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 27041514 GTACAAAGGGCAGGGATGTAGTCAACGTGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 27041571 Query 61 CTCGTTGAAGACCAACAATTG 81 ||| ||||||||||||||||| Sbjct 27041572 CTCATTGAAGACCAACAATTG 27041592 >seq4 Length=28907061 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/61 (92%), Gaps = 3/61 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCG-CTTACTAGG-AATT 58 ||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct 7486155 GTACAAAAGGCAGGGACGTAGTCAACGCAAGC-TGATGACTCGCGACTTACTAGGTAATT 7486213 Query 59 T 59 | Sbjct 7486214 T 7486214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751715513465