Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq38612 96.9 6e-18
seq2 95.1 2e-17
seq38289 87.8 3e-15
>seq38612
Length=385502
Score = 96.9 bits (106), Expect = 6e-18
Identities = 124/167 (74%), Gaps = 8/167 (5%)
Strand=Plus/Minus
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT-----AGGGATAGTCGGGGGTG 211
||||| ||||| ||| |||| |||||||||||| ||||| | ||||||
Sbjct 317749 CTATTGTGTTGCCTTC-AGGATAAGAGTAATGATTAATTTAATAGGGACAATCGGGGCCA 317691
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271
| ||||| || || |||||||||||||||||||| || |||| ||| || | |||
Sbjct 317690 TTTGTATTTCATAGTTAGAGGTGAAATTCTTGGATTCATGAAAGATGAACAACCGTAAAA 317631
Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT-AGGG 317
| || |||| |||||||| |||||||| ||||||||||| ||||
Sbjct 317630 ACATTTGCCAATGATGTTTTAATTAATCA-AGAACGAAAGTTGAGGG 317585
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257
|| |||||||| | ||||| | | || |||||||||||||||||||| || || |
Sbjct 304220 GACAGTCGGGGTCATTTGTATTTA-TAGTTAGAGGTGAAATTCTTGGATTCATAAAAAAT 304162
Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317
||| ||||||||| || |||| ||| ||||||||||||| |||| |||||| |||
Sbjct 304161 GAACAACTGCGAAAATATTTGCCAATGATATTTTCATTAATCA-AGAACAAAAGTTGGGG 304103
Query 318 G 318
|
Sbjct 304102 G 304102
>seq2
Length=32560536
Score = 95.1 bits (104), Expect = 2e-17
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
||||| |||||| | ||| || ||||||||||| ||||| ||||||||| | ||
Sbjct 401821 CTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 401762
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266
||| || ||||||||| |||||||||||||||| ||||| ||| ||||
Sbjct 401761 ATTTCATAGTCAGAGGTAAAATTCTTGGATTTATGAAAGACGAACAACTG 401712
>seq38289
Length=2696
Score = 87.8 bits (96), Expect = 3e-15
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257
|| |||||||| | ||||| || || || ||||||||||||||||| || ||||
Sbjct 109 GACAGTCGGGGTCATTTGTATTTTATAGTTAGCGGTGAAATTCTTGGATTCATGAAAGAT 50
Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||| ||||||||| | || |||| |||||||||||||||||
Sbjct 49 GAACAACTGCGAAAACATTTGCCAATGATGTTTTCATTAATCA 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914842605248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |