Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq38612 96.9 6e-18 seq2 95.1 2e-17 seq38289 87.8 3e-15 >seq38612 Length=385502 Score = 96.9 bits (106), Expect = 6e-18 Identities = 124/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT-----AGGGATAGTCGGGGGTG 211 ||||| ||||| ||| |||| |||||||||||| ||||| | |||||| Sbjct 317749 CTATTGTGTTGCCTTC-AGGATAAGAGTAATGATTAATTTAATAGGGACAATCGGGGCCA 317691 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| || || |||||||||||||||||||| || |||| ||| || | ||| Sbjct 317690 TTTGTATTTCATAGTTAGAGGTGAAATTCTTGGATTCATGAAAGATGAACAACCGTAAAA 317631 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT-AGGG 317 | || |||| |||||||| |||||||| ||||||||||| |||| Sbjct 317630 ACATTTGCCAATGATGTTTTAATTAATCA-AGAACGAAAGTTGAGGG 317585 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 || |||||||| | ||||| | | || |||||||||||||||||||| || || | Sbjct 304220 GACAGTCGGGGTCATTTGTATTTA-TAGTTAGAGGTGAAATTCTTGGATTCATAAAAAAT 304162 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||| ||||||||| || |||| ||| ||||||||||||| |||| |||||| ||| Sbjct 304161 GAACAACTGCGAAAATATTTGCCAATGATATTTTCATTAATCA-AGAACAAAAGTTGGGG 304103 Query 318 G 318 | Sbjct 304102 G 304102 >seq2 Length=32560536 Score = 95.1 bits (104), Expect = 2e-17 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| |||||| | ||| || ||||||||||| ||||| ||||||||| | || Sbjct 401821 CTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 401762 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 ||| || ||||||||| |||||||||||||||| ||||| ||| |||| Sbjct 401761 ATTTCATAGTCAGAGGTAAAATTCTTGGATTTATGAAAGACGAACAACTG 401712 >seq38289 Length=2696 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 || |||||||| | ||||| || || || ||||||||||||||||| || |||| Sbjct 109 GACAGTCGGGGTCATTTGTATTTTATAGTTAGCGGTGAAATTCTTGGATTCATGAAAGAT 50 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||| ||||||||| | || |||| ||||||||||||||||| Sbjct 49 GAACAACTGCGAAAACATTTGCCAATGATGTTTTCATTAATCA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914842605248