Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 145 3e-32 seq7 111 7e-22 seq28336 105 3e-20 seq6 89.7 2e-15 >seq4 Length=28907061 Score = 145 bits (160), Expect = 3e-32 Identities = 147/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 493 GGTGGGAACC-CGTGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 ||||||| || | | |||| ||||| ||||||| || || | || || || || || Sbjct 17966504 GGTGGGATCCTCCTATGGGTTGCACCGCCGACCGACCCCAATATTTTGTGAAGGGTTCGA 17966563 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 || |||||||| | ||||||||||||||||||||| |||||||||| || |||||| Sbjct 17966564 GTGAGAGCATACTTATTGGGACCCGAAAGATGGTGAGCTATGCCTGAGCGTGGCGAAGCC 17966623 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 |||||||||||| ||||||| |||| | | ||| |||||||||| | ||| | ||| Sbjct 17966624 AGAGGAAACTCTCATGGAGGCCCGCAACAATACTGATGTGCAAATCGTTTGTCTGACTTG 17966683 Query 671 GGTATAGGG 679 ||||||||| Sbjct 17966684 GGTATAGGG 17966692 >seq7 Length=30551617 Score = 111 bits (122), Expect = 7e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||||| | || || ||||||||||||| |||||||||||||| ||||||| | Sbjct 13433287 GGGCGGTAAATTCCGTCCAAGGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCG 13433346 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 || ||||||||||||| |||||| ||||||||| ||| Sbjct 13433347 CGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAA 13433385 >seq28336 Length=23564 Score = 105 bits (116), Expect = 3e-20 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 || |||| ||||||| |||| | ||| ||||||||||||||||| || | |||||| Sbjct 17479 TTCGAGTGAGAGCATTCCTGTCAGAACCAAAAAGATGGTGAACTATGTCTAAGCAGGGTG 17538 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||| ||||| || |||| || |||| || | ||| | | ||||||| | || Sbjct 17539 AAGCCAGAGAAAACTATGATGGATGCCCGCAACGATACTGACATCCAAATCGTTTATCTG 17598 Query 666 ATTTGGGTATAGGGGC 681 | ||| |||||||||| Sbjct 17599 ACTTGTGTATAGGGGC 17614 >seq6 Length=22682783 Score = 89.7 bits (98), Expect = 2e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || || |||| ||||||| ||| |||| ||||||||||||||||| | | Sbjct 19961640 GAAGGGTTCGAGTGAGAGCATTCTTGTCAGGACGAAAAAGATGGTGAACTATGTATAAGC 19961699 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||||||||| ||| ||||| ||||||| || |||| | | || | ||||||||| | Sbjct 19961700 AGGGTGAAGCTAGATAAAACTATGGTGGATGCCCGCAATGATAGTGACATGCAAATCGTT 19961759 Query 660 CGTCAAATTTGGGTATAGGGGC 681 || | ||| |||||||||| Sbjct 19961760 TATCTGACTTGTGTATAGGGGC 19961781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079162356050