Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq4 145 3e-32
seq7 111 7e-22
seq28336 105 3e-20
seq6 89.7 2e-15
>seq4
Length=28907061
Score = 145 bits (160), Expect = 3e-32
Identities = 147/189 (78%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 493 GGTGGGAACC-CGTGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550
||||||| || | | |||| ||||| ||||||| || || | || || || || ||
Sbjct 17966504 GGTGGGATCCTCCTATGGGTTGCACCGCCGACCGACCCCAATATTTTGTGAAGGGTTCGA 17966563
Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610
|| |||||||| | ||||||||||||||||||||| |||||||||| || ||||||
Sbjct 17966564 GTGAGAGCATACTTATTGGGACCCGAAAGATGGTGAGCTATGCCTGAGCGTGGCGAAGCC 17966623
Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670
|||||||||||| ||||||| |||| | | ||| |||||||||| | ||| | |||
Sbjct 17966624 AGAGGAAACTCTCATGGAGGCCCGCAACAATACTGATGTGCAAATCGTTTGTCTGACTTG 17966683
Query 671 GGTATAGGG 679
|||||||||
Sbjct 17966684 GGTATAGGG 17966692
>seq7
Length=30551617
Score = 111 bits (122), Expect = 7e-22
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131
||| |||||||| | || || ||||||||||||| |||||||||||||| ||||||| |
Sbjct 13433287 GGGCGGTAAATTCCGTCCAAGGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCG 13433346
Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170
|| ||||||||||||| |||||| ||||||||| |||
Sbjct 13433347 CGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAA 13433385
>seq28336
Length=23564
Score = 105 bits (116), Expect = 3e-20
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605
|| |||| ||||||| |||| | ||| ||||||||||||||||| || | ||||||
Sbjct 17479 TTCGAGTGAGAGCATTCCTGTCAGAACCAAAAAGATGGTGAACTATGTCTAAGCAGGGTG 17538
Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665
||||||||| ||||| || |||| || |||| || | ||| | | ||||||| | ||
Sbjct 17539 AAGCCAGAGAAAACTATGATGGATGCCCGCAACGATACTGACATCCAAATCGTTTATCTG 17598
Query 666 ATTTGGGTATAGGGGC 681
| ||| ||||||||||
Sbjct 17599 ACTTGTGTATAGGGGC 17614
>seq6
Length=22682783
Score = 89.7 bits (98), Expect = 2e-15
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599
|| || || |||| ||||||| ||| |||| ||||||||||||||||| | |
Sbjct 19961640 GAAGGGTTCGAGTGAGAGCATTCTTGTCAGGACGAAAAAGATGGTGAACTATGTATAAGC 19961699
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
|||||||||| ||| ||||| ||||||| || |||| | | || | ||||||||| |
Sbjct 19961700 AGGGTGAAGCTAGATAAAACTATGGTGGATGCCCGCAATGATAGTGACATGCAAATCGTT 19961759
Query 660 CGTCAAATTTGGGTATAGGGGC 681
|| | ||| ||||||||||
Sbjct 19961760 TATCTGACTTGTGTATAGGGGC 19961781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079162356050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |