Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq20907 120 3e-25 >seq20907 Length=607 Score = 120 bits (132), Expect = 3e-25 Identities = 137/176 (78%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| | || |||||| ||||||||| || |||||| |||||||||| Sbjct 53 GGTGGATGCCTTGACTGGTAAAGGCGATGAAGGACGTACTAGACTGCGATAAGCTACGGG 112 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || || || | | | ||||||||||||| ||||||||||||||||| || || | ||| Sbjct 113 GAGCTGTCA-AGAAGCTTTGATCCGTAGATTTCCGAATGGGGCAACCCAATGTA-TAGAG 170 Query 127 ATATATCATAACGCTAGGCGTTAG--GCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||||| ||| || ||| ||| ||||||| |||||| |||||||||| |||| Sbjct 171 ATATA-CATTAC-CTA---TATAGGAGCGAACGAGGGGAATTGAAACATCTTAGTA 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476619623431