Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq31627 192 2e-46 seq38496 109 1e-21 seq6 89.7 1e-15 seq7 80.6 7e-13 seq2 77.0 8e-12 >seq31627 Length=2499 Score = 192 bits (212), Expect = 2e-46 Identities = 246/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 2255 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 2196 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126 || ||||||| ||||||||||||| | || ||||||| | | ||| ||||| Sbjct 2195 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 2142 Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 | | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 2141 TTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 2082 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 2081 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGC 2022 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 2021 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 1962 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 1961 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 1928 >seq38496 Length=246243 Score = 109 bits (120), Expect = 1e-21 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| ||||||||||||| || | ||||||||| | |||||| || Sbjct 3883 GGAATTTCCGGTGGAGCGTTGAAATGCGTAGAGATCGGAAGGAACACCCAAGGCGAAAGC 3824 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| |||||||||| |||||||| Sbjct 3823 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 3764 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| |||||||| || |||||||| Sbjct 3763 GACCCCGGTAGTCCTAGCTATAAACGAT 3736 >seq6 Length=22682783 Score = 89.7 bits (98), Expect = 1e-15 Identities = 168/245 (69%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 168 CTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTG 227 ||||||| || || || | |||||| | || ||| ||||||||||||| || | Sbjct 17304329 CTAGAGTATGGTAGGGGCTGAGGGAATTTCCGGTAGAGCGATGAAATGCGTAGAGATCGG 17304388 Query 228 GAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGC 287 ||||||||| | |||||| ||| | |||| | ||| || | | |||||| Sbjct 17304389 AAGGAACACCCACGGCGAAAGCACTCTGTTGGG------CCGACACTGAGAGATGAAAGC 17304442 Query 288 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA-G 346 |||||||||| |||||| | ||||| ||||||| ||| |||||||| | || | Sbjct 17304443 TAGGGGAGCAAATTGGATTACAAACCCTAGTAGTCCTAGCCGTAAACGATGGATATTACG 17304502 Query 347 TTGTTGGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGG 404 | |||| | | | | || || | ||||||||| ||| |||| |||||||||| Sbjct 17304503 TGGTTGTGCGTATCCACCCGTGCAATGTTGTAGCTAACACGTTAAGTATCCCGCCTGGGG 17304562 Query 405 AATAC 409 | ||| Sbjct 17304563 AGTAC 17304567 >seq7 Length=30551617 Score = 80.6 bits (88), Expect = 7e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| | | ||||| ||||||||||||||||||| | ||| ||| Sbjct 30273014 TATCTGGGGAATAAGCATCAGTTAACTCTGTGCCAGCAGCCGCGGTAAGATAGAGGATGC 30272955 Query 63 AAGCGTTAATCGGAATTACTGGGCGTA 89 |||||||| |||||| | |||||||| Sbjct 30272954 AAGCGTTATCCGGAATGATTGGGCGTA 30272928 >seq2 Length=32560536 Score = 77.0 bits (84), Expect = 8e-12 Identities = 91/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| ||||||||||||| || | ||||||||| | |||||| || Sbjct 5529861 GGAATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCAAGGCGAAAGC 5529802 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | ||||||| |||||||||| ||||| || Sbjct 5529801 ACTCTGCTGGGGCGACACTGACACTGAGAGACGAAAGGTAGGGGAGCAAATGGGATT-GA 5529743 Query 310 TA 311 || Sbjct 5529742 TA 5529741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289096398304