Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 192 2e-46
seq38496 109 1e-21
seq6 89.7 1e-15
seq7 80.6 7e-13
seq2 77.0 8e-12
>seq31627
Length=2499
Score = 192 bits (212), Expect = 2e-46
Identities = 246/334 (74%), Gaps = 10/334 (3%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 2255 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 2196
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126
|| ||||||| ||||||||||||| | || ||||||| | | ||| |||||
Sbjct 2195 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 2142
Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183
| | | | || |||| | | ||| | | || ||| ||||| | |||||
Sbjct 2141 TTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 2082
Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243
| | |||||||| | |||||| ||||||| || |||| | | |||||| |||| ||
Sbjct 2081 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGC 2022
Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303
||||||||| | ||||| || |||||| | ||||||| |||||||| ||| ||
Sbjct 2021 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 1962
Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||||||||| ||| ||||||||
Sbjct 1961 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 1928
>seq38496
Length=246243
Score = 109 bits (120), Expect = 1e-21
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | ||| ||| ||||||||||||| || | ||||||||| | |||||| ||
Sbjct 3883 GGAATTTCCGGTGGAGCGTTGAAATGCGTAGAGATCGGAAGGAACACCCAAGGCGAAAGC 3824
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
| | ||||| |||||||| || | |||||||| |||||||||| ||||||||
Sbjct 3823 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 3764
Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337
|||| |||||||| || ||||||||
Sbjct 3763 GACCCCGGTAGTCCTAGCTATAAACGAT 3736
>seq6
Length=22682783
Score = 89.7 bits (98), Expect = 1e-15
Identities = 168/245 (69%), Gaps = 9/245 (4%)
Strand=Plus/Plus
Query 168 CTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTG 227
||||||| || || || | |||||| | || ||| ||||||||||||| || |
Sbjct 17304329 CTAGAGTATGGTAGGGGCTGAGGGAATTTCCGGTAGAGCGATGAAATGCGTAGAGATCGG 17304388
Query 228 GAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGC 287
||||||||| | |||||| ||| | |||| | ||| || | | ||||||
Sbjct 17304389 AAGGAACACCCACGGCGAAAGCACTCTGTTGGG------CCGACACTGAGAGATGAAAGC 17304442
Query 288 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA-G 346
|||||||||| |||||| | ||||| ||||||| ||| |||||||| | || |
Sbjct 17304443 TAGGGGAGCAAATTGGATTACAAACCCTAGTAGTCCTAGCCGTAAACGATGGATATTACG 17304502
Query 347 TTGTTGGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGG 404
| |||| | | | | || || | ||||||||| ||| |||| ||||||||||
Sbjct 17304503 TGGTTGTGCGTATCCACCCGTGCAATGTTGTAGCTAACACGTTAAGTATCCCGCCTGGGG 17304562
Query 405 AATAC 409
| |||
Sbjct 17304563 AGTAC 17304567
>seq7
Length=30551617
Score = 80.6 bits (88), Expect = 7e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| | | ||||| ||||||||||||||||||| | ||| |||
Sbjct 30273014 TATCTGGGGAATAAGCATCAGTTAACTCTGTGCCAGCAGCCGCGGTAAGATAGAGGATGC 30272955
Query 63 AAGCGTTAATCGGAATTACTGGGCGTA 89
|||||||| |||||| | ||||||||
Sbjct 30272954 AAGCGTTATCCGGAATGATTGGGCGTA 30272928
>seq2
Length=32560536
Score = 77.0 bits (84), Expect = 8e-12
Identities = 91/122 (75%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | ||| ||| ||||||||||||| || | ||||||||| | |||||| ||
Sbjct 5529861 GGAATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCAAGGCGAAAGC 5529802
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
| | ||||| |||||||| || | ||||||| |||||||||| ||||| ||
Sbjct 5529801 ACTCTGCTGGGGCGACACTGACACTGAGAGACGAAAGGTAGGGGAGCAAATGGGATT-GA 5529743
Query 310 TA 311
||
Sbjct 5529742 TA 5529741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289096398304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |