Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq20748 152 7e-35
seq5 98.7 1e-18
seq18331 75.2 2e-11
seq33443 73.4 5e-11
>seq20748
Length=620
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 280 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 222
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 221 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 164
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 163 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 113
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 112 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 53
Query 246 GTA 248
|||
Sbjct 52 GTA 50
>seq5
Length=15272566
Score = 98.7 bits (108), Expect = 1e-18
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
||||| |||||| ||||||||||||| ||||||||||| |||||| || |||| | |
Sbjct 6122611 GCACCTCTTCTCTCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 6122670
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||| |||||| |||||| | ||||||||||||||| ||||
Sbjct 6122671 AAGCGCCCTAGTATACTCTACTTATTCACCTGTGTCGGTTTGAGGTA 6122717
>seq18331
Length=516
Score = 75.2 bits (82), Expect = 2e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAA 188
||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 46
>seq33443
Length=3532
Score = 73.4 bits (80), Expect = 5e-11
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAAC 189
||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 2754 GCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAAC 2801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694137303923
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |