Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq20748 273 5e-71
seq33443 190 4e-46
seq38520 176 1e-41
seq2 176 1e-41
seq4 129 1e-27
seq38628 122 2e-25
seq7 114 3e-23
seq36022 93.3 9e-17
seq28826 91.5 3e-16
seq7253 91.5 3e-16
seq28197 86.0 1e-14
seq18331 78.8 2e-12
seq1 75.2 2e-11
>seq20748
Length=620
Score = 273 bits (302), Expect = 5e-71
Identities = 286/376 (76%), Gaps = 20/376 (5%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | || | ||||||||||| ||| || ||||||| | |
Sbjct 466 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 407
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 406 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 347
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
| |||| |||||| |||||||||||| ||||||| |||| ||| | ||||
Sbjct 346 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 295
Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238
| || |||| |||||||||||||||||||| ||||| ||||||||||| || | |
Sbjct 294 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 235
Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298
||||||||| ||||||||||| |||||||||||| ||| | | ||| || | |
Sbjct 234 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 175
Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348
| ||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 115
Query 349 CTTAACAATAGTTCTC 364
||| || ||||||
Sbjct 114 CTTCGACATGGTTCTC 99
>seq33443
Length=3532
Score = 190 bits (210), Expect = 4e-46
Identities = 203/263 (77%), Gaps = 15/263 (6%)
Strand=Plus/Plus
Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161
|||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||
Sbjct 2546 GAATTTCGCTACCTTAGGGCCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTTGC 2605
Query 162 CTGCTTCGATTGCTCTAACAGATCCC-------CTTAACCTTCCAGCACCGGGCAGGCGT 214
| |||| | | | ||| || | |||||||||| |||| ||||||||||
Sbjct 2606 CAACTTCCCTGTC---ATCAGGTCACCAACTTTCTTAACCTTCTGGCACTGGGCAGGCGT 2662
Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC--TGTGTTTTTGGTAAACAGTCG 272
|||| | ||||| |||||| |||||| | || ||| | ||||||||||||| |||||
Sbjct 2663 CAGCCTCCATACA-CGTCTTACGACTTTCCGGAGACCTATATGTTTTTGGTAAATAGTCG 2721
Query 273 CTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGG 332
| || ||| || || || ||| | ||| | |||||||||||||| |||||| ||||
Sbjct 2722 CCCGGACCTGATCACTACGACCT-CCTTAG-GAAGCACCCCTTCTCCCGAAGTTATGGGG 2779
Query 333 TCATTTTGCCGAGTTCCTTAACA 355
|||||||||||||||||||||
Sbjct 2780 CTATTTTGCCGAGTTCCTTAACA 2802
>seq38520
Length=214065
Score = 176 bits (194), Expect = 1e-41
Identities = 150/185 (81%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 92 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 151
|| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 88621 ACTCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGTTGTTCACTGGGG 88562
Query 152 CTTAAGTTCACTGCTTCGATTGCTCTA----ACAGATCCCCTTAACCTTCCAGCACCGGG 207
||| || | ||||| | || | || | |||||||||||| ||| |||
Sbjct 88561 CTTCGGTCGCCAGCTTCCCTATCTTCAGGTCACTAACTTCCTTAACCTTCCGACACTGGG 88502
Query 208 CAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267
||||||||| |||| |||||| ||||| |||||| ||||| ||||||||||||| |||||
Sbjct 88501 CAGGCGTCAACTCCCATACATGGTCTTACGACTTTGCAGAGACCTGTGTTTTTGATAAAC 88442
Query 268 AGTCG 272
|||||
Sbjct 88441 AGTCG 88437
>seq2
Length=32560536
Score = 176 bits (194), Expect = 1e-41
Identities = 160/200 (80%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 100 AGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTT 159
||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||
Sbjct 1462432 AGGAATTTCGCTACCTTAGGATCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTT 1462373
Query 160 CACTGCTTCGATTGC-TC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTC 215
| ||||| | | || | || | |||||||||||||||| |||| |||||
Sbjct 1462372 GCCAGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCAGCATTGGGCTAGCGTC 1462313
Query 216 AGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTT 275
||| || |||||| |||| |||||| || || |||||||||||||||||||||||||
Sbjct 1462312 AGCCCCCATACATGGTCTAACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCC 1462253
Query 276 GGGCCTATTCTCTGCGGCCT 295
|||||| || ||||| |||
Sbjct 1462252 GGGCCTGGTCACTGCGACCT 1462233
Score = 158 bits (174), Expect = 3e-36
Identities = 103/113 (91%), Gaps = 3/113 (3%)
Strand=Plus/Minus
Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86
|||||||||||||| | |||||| |||| | ||||||||||||||||||||||||
Sbjct 1693116 ATTTCACCGAGTCTCTCTCCGAGACA---CCCAGAACGTTACGCCTTTCGTGCGGGTCGG 1693060
Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 139
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693059 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 1693007
Score = 98.7 bits (108), Expect = 2e-18
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||||||||||| |||| |||||||||||||| || |||||| ||||| |||||| | |
Sbjct 1692940 CCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTACGG 1692881
Query 247 AAACCTGTGTTTTTGGTAA 265
| |||||||||||||||||
Sbjct 1692880 AGACCTGTGTTTTTGGTAA 1692862
>seq4
Length=28907061
Score = 129 bits (142), Expect = 1e-27
Identities = 82/89 (92%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 24475330 ATTTCACCGAGTCTCTCTCCAAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 24475271
Query 87 AACTTACCCGACAAGGAATTTCGCTACCT 115
|||||||||||||||||||||||||||||
Sbjct 24475270 AACTTACCCGACAAGGAATTTCGCTACCT 24475242
Score = 107 bits (118), Expect = 4e-21
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 24475144 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 24475085
Query 151 GCTT 154
||||
Sbjct 24475084 GCTT 24475081
Score = 87.8 bits (96), Expect = 4e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86
|||| || | | || | |||||| |||| || ||| ||| ||||||| |||| || |
Sbjct 25159568 ATTTTACTGCGCCTCTCTTTGAGATAGTGACCTGATCTTTATGCCTTTCATGCGAGTTGA 25159627
Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTA 132
|||||||| ||||||||| || | ||||||| | ||||||||||||
Sbjct 25159628 AACTTACCAGACAAGGAACTTGGATACCTTACGGCCGTTATAGTTA 25159673
>seq38628
Length=344691
Score = 122 bits (134), Expect = 2e-25
Identities = 118/152 (78%), Gaps = 10/152 (7%)
Strand=Plus/Plus
Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121
|| |||| | ||||||| ||||| ||||| | |||||||||||||||||||||||||
Sbjct 13941 TCATTACACTATTCGTGCAGGTCGCTACTTATGCTACAAGGAATTTCGCTACCTTAGGAC 14000
Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181
|||| |||||| |||||||||||| ||||||| |||| ||| | |||||
Sbjct 14001 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAACA 14052
Query 182 GATCCCCTT--AACCTTCCAGCACCGGGCAGG 211
|| |||| ||||||||||||||||||||
Sbjct 14053 CTTCTCCTTCCGACCTTCCAGCACCGGGCAGG 14084
>seq7
Length=30551617
Score = 114 bits (126), Expect = 3e-23
Identities = 86/101 (85%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127
|| ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 3499423 CGTCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAACTTCGCTACATTAGGACCGTTAT 3499364
Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC 168
||||||| ||| ||| | ||| ||| |||| | |||||
Sbjct 3499363 GGTTACGGTCGCTGTTCATCGGGACTTCAGTTGCCAGCTTC 3499323
Score = 95.1 bits (104), Expect = 3e-17
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
|||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||
Sbjct 12677 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGGCAATGAATTTAGCTACTTTAGGA 12736
Query 121 CC 122
||
Sbjct 12737 CC 12738
>seq36022
Length=2319
Score = 93.3 bits (102), Expect = 9e-17
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 115
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1638 AATAGTTACGCCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAATTTCGCTACCT 1583
>seq28826
Length=18163
Score = 91.5 bits (100), Expect = 3e-16
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107
||||||||| || ||| |||||||||| ||||| ||| ||||||||||| ||| |||||
Sbjct 1681 AGACAGTGCTCAGATCATTACGCCTTTTGTGCGAGTCCAAACTTACCCGATAAGAAATTT 1622
Query 108 CGCTACCTTAGGACC 122
||||||||||||||
Sbjct 1621 TGCTACCTTAGGACC 1607
>seq7253
Length=1156
Score = 91.5 bits (100), Expect = 3e-16
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||| ||| || ||||||| | |||||
Sbjct 246 GCATCTTCACGGAGAATTTAATTTCACCGGGTCCATGTCGGAGACAGCAGGATAGTCGTT 305
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||||||| |||| ||||| ||||||||||||| ||||||||||||| |||
Sbjct 306 ACACCATTCGTGCAAGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAATTA 365
Query 127 TAGTT 131
||||
Sbjct 366 GAGTT 370
>seq28197
Length=97505
Score = 86.0 bits (94), Expect = 1e-14
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 117
|||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 85260 ATCGTTGCGCCTTTCGTGCGGGTCGGAACTTAGCCGACAAGAAATTTTGCTACCTTA 85316
>seq18331
Length=516
Score = 78.8 bits (86), Expect = 2e-12
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 46
>seq1
Length=28142018
Score = 75.2 bits (82), Expect = 2e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154
|||||||||||| |||||||||||||||||||||||| ||||| || || ||||
Sbjct 10608293 GGAATTTCGCTAGCTTAGGACCGTTATAGTTACGGCCACCGTTCACCGGAGCTT 10608346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1061985122176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |