Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq20748 273 5e-71 seq33443 190 4e-46 seq38520 176 1e-41 seq2 176 1e-41 seq4 129 1e-27 seq38628 122 2e-25 seq7 114 3e-23 seq36022 93.3 9e-17 seq28826 91.5 3e-16 seq7253 91.5 3e-16 seq28197 86.0 1e-14 seq18331 78.8 2e-12 seq1 75.2 2e-11 >seq20748 Length=620 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 466 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 407 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 406 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 347 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 346 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 295 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 294 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 235 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 234 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 175 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 174 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 115 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 114 CTTCGACATGGTTCTC 99 >seq33443 Length=3532 Score = 190 bits (210), Expect = 4e-46 Identities = 203/263 (77%), Gaps = 15/263 (6%) Strand=Plus/Plus Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 |||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||| Sbjct 2546 GAATTTCGCTACCTTAGGGCCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTTGC 2605 Query 162 CTGCTTCGATTGCTCTAACAGATCCC-------CTTAACCTTCCAGCACCGGGCAGGCGT 214 | |||| | | | ||| || | |||||||||| |||| |||||||||| Sbjct 2606 CAACTTCCCTGTC---ATCAGGTCACCAACTTTCTTAACCTTCTGGCACTGGGCAGGCGT 2662 Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC--TGTGTTTTTGGTAAACAGTCG 272 |||| | ||||| |||||| |||||| | || ||| | ||||||||||||| ||||| Sbjct 2663 CAGCCTCCATACA-CGTCTTACGACTTTCCGGAGACCTATATGTTTTTGGTAAATAGTCG 2721 Query 273 CTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGG 332 | || ||| || || || ||| | ||| | |||||||||||||| |||||| |||| Sbjct 2722 CCCGGACCTGATCACTACGACCT-CCTTAG-GAAGCACCCCTTCTCCCGAAGTTATGGGG 2779 Query 333 TCATTTTGCCGAGTTCCTTAACA 355 ||||||||||||||||||||| Sbjct 2780 CTATTTTGCCGAGTTCCTTAACA 2802 >seq38520 Length=214065 Score = 176 bits (194), Expect = 1e-41 Identities = 150/185 (81%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 92 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 151 || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 88621 ACTCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGTTGTTCACTGGGG 88562 Query 152 CTTAAGTTCACTGCTTCGATTGCTCTA----ACAGATCCCCTTAACCTTCCAGCACCGGG 207 ||| || | ||||| | || | || | |||||||||||| ||| ||| Sbjct 88561 CTTCGGTCGCCAGCTTCCCTATCTTCAGGTCACTAACTTCCTTAACCTTCCGACACTGGG 88502 Query 208 CAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267 ||||||||| |||| |||||| ||||| |||||| ||||| ||||||||||||| ||||| Sbjct 88501 CAGGCGTCAACTCCCATACATGGTCTTACGACTTTGCAGAGACCTGTGTTTTTGATAAAC 88442 Query 268 AGTCG 272 ||||| Sbjct 88441 AGTCG 88437 >seq2 Length=32560536 Score = 176 bits (194), Expect = 1e-41 Identities = 160/200 (80%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 100 AGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTT 159 ||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||| Sbjct 1462432 AGGAATTTCGCTACCTTAGGATCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTT 1462373 Query 160 CACTGCTTCGATTGC-TC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTC 215 | ||||| | | || | || | |||||||||||||||| |||| ||||| Sbjct 1462372 GCCAGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCAGCATTGGGCTAGCGTC 1462313 Query 216 AGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTT 275 ||| || |||||| |||| |||||| || || ||||||||||||||||||||||||| Sbjct 1462312 AGCCCCCATACATGGTCTAACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCC 1462253 Query 276 GGGCCTATTCTCTGCGGCCT 295 |||||| || ||||| ||| Sbjct 1462252 GGGCCTGGTCACTGCGACCT 1462233 Score = 158 bits (174), Expect = 3e-36 Identities = 103/113 (91%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||||||| | |||||| |||| | |||||||||||||||||||||||| Sbjct 1693116 ATTTCACCGAGTCTCTCTCCGAGACA---CCCAGAACGTTACGCCTTTCGTGCGGGTCGG 1693060 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 139 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693059 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 1693007 Score = 98.7 bits (108), Expect = 2e-18 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||||||||||| |||| |||||||||||||| || |||||| ||||| |||||| | | Sbjct 1692940 CCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTACGG 1692881 Query 247 AAACCTGTGTTTTTGGTAA 265 | ||||||||||||||||| Sbjct 1692880 AGACCTGTGTTTTTGGTAA 1692862 >seq4 Length=28907061 Score = 129 bits (142), Expect = 1e-27 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 24475330 ATTTCACCGAGTCTCTCTCCAAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 24475271 Query 87 AACTTACCCGACAAGGAATTTCGCTACCT 115 ||||||||||||||||||||||||||||| Sbjct 24475270 AACTTACCCGACAAGGAATTTCGCTACCT 24475242 Score = 107 bits (118), Expect = 4e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 24475144 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 24475085 Query 151 GCTT 154 |||| Sbjct 24475084 GCTT 24475081 Score = 87.8 bits (96), Expect = 4e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||| || | | || | |||||| |||| || ||| ||| ||||||| |||| || | Sbjct 25159568 ATTTTACTGCGCCTCTCTTTGAGATAGTGACCTGATCTTTATGCCTTTCATGCGAGTTGA 25159627 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTA 132 |||||||| ||||||||| || | ||||||| | |||||||||||| Sbjct 25159628 AACTTACCAGACAAGGAACTTGGATACCTTACGGCCGTTATAGTTA 25159673 >seq38628 Length=344691 Score = 122 bits (134), Expect = 2e-25 Identities = 118/152 (78%), Gaps = 10/152 (7%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 || |||| | ||||||| ||||| ||||| | ||||||||||||||||||||||||| Sbjct 13941 TCATTACACTATTCGTGCAGGTCGCTACTTATGCTACAAGGAATTTCGCTACCTTAGGAC 14000 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 |||| |||||| |||||||||||| ||||||| |||| ||| | ||||| Sbjct 14001 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAACA 14052 Query 182 GATCCCCTT--AACCTTCCAGCACCGGGCAGG 211 || |||| |||||||||||||||||||| Sbjct 14053 CTTCTCCTTCCGACCTTCCAGCACCGGGCAGG 14084 >seq7 Length=30551617 Score = 114 bits (126), Expect = 3e-23 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 || ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| Sbjct 3499423 CGTCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAACTTCGCTACATTAGGACCGTTAT 3499364 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC 168 ||||||| ||| ||| | ||| ||| |||| | ||||| Sbjct 3499363 GGTTACGGTCGCTGTTCATCGGGACTTCAGTTGCCAGCTTC 3499323 Score = 95.1 bits (104), Expect = 3e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||| Sbjct 12677 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGGCAATGAATTTAGCTACTTTAGGA 12736 Query 121 CC 122 || Sbjct 12737 CC 12738 >seq36022 Length=2319 Score = 93.3 bits (102), Expect = 9e-17 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 115 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1638 AATAGTTACGCCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAATTTCGCTACCT 1583 >seq28826 Length=18163 Score = 91.5 bits (100), Expect = 3e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||||||||| || ||| |||||||||| ||||| ||| ||||||||||| ||| ||||| Sbjct 1681 AGACAGTGCTCAGATCATTACGCCTTTTGTGCGAGTCCAAACTTACCCGATAAGAAATTT 1622 Query 108 CGCTACCTTAGGACC 122 |||||||||||||| Sbjct 1621 TGCTACCTTAGGACC 1607 >seq7253 Length=1156 Score = 91.5 bits (100), Expect = 3e-16 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||| ||| || ||||||| | ||||| Sbjct 246 GCATCTTCACGGAGAATTTAATTTCACCGGGTCCATGTCGGAGACAGCAGGATAGTCGTT 305 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| |||| ||||| ||||||||||||| ||||||||||||| ||| Sbjct 306 ACACCATTCGTGCAAGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAATTA 365 Query 127 TAGTT 131 |||| Sbjct 366 GAGTT 370 >seq28197 Length=97505 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 117 |||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 85260 ATCGTTGCGCCTTTCGTGCGGGTCGGAACTTAGCCGACAAGAAATTTTGCTACCTTA 85316 >seq18331 Length=516 Score = 78.8 bits (86), Expect = 2e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 46 >seq1 Length=28142018 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||||||||| |||||||||||||||||||||||| ||||| || || |||| Sbjct 10608293 GGAATTTCGCTAGCTTAGGACCGTTATAGTTACGGCCACCGTTCACCGGAGCTT 10608346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061985122176