Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6 253 6e-65 seq31627 197 4e-48 seq3 197 4e-48 seq5 159 1e-36 seq28698 132 1e-28 seq4 131 5e-28 seq38496 91.5 4e-16 seq2 91.5 4e-16 seq38597 86.0 2e-14 seq7 77.0 1e-11 >seq6 Length=22682783 Score = 253 bits (280), Expect = 6e-65 Identities = 238/299 (80%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 |||| || |||| |||||||||||||||| ||||| || || || ||||| || | Sbjct 11989464 AATTTGATGCAAAGCGAAGAACCTTACCAGGGCTTGATATGCTGCGAATCCTCTTGAAAG 11989405 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 |||| | || |||||| || ||||||| ||||||| |||| |||||||||| Sbjct 11989404 GGAGGAGTGCC-TTCGGGAACGCGAAC-ACAGGTGGTGCATGGCTGTCATCAGCTCGTGC 11989347 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247 | |||| ||||||||||||||||||||||||||||||||||| | ||||||| || | || Sbjct 11989346 CATGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGTTTAGTTGTCAACGTT 11989287 Query 248 AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCA 307 |||| || || |||| ||| ||||||| || ||||||||||||| ||| ||||||| Sbjct 11989286 TAGTTTGGAACCCTAAACAAACTTCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCA 11989227 Query 308 AATCATCATGCCCCTTA-TGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 | ||||||||||||||| || ||||| |||||||||||||||||||| ||||||| Sbjct 11989226 AGTCATCATGCCCCTTACTGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGG 11989168 Score = 197 bits (218), Expect = 4e-48 Identities = 176/218 (81%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||| ||| |||||||| |||||||||||| Sbjct 17304565 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACAGGGGCCCGCACATGCGGTGGAGCAT 17304624 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||| ||||||| ||||||||||||||| |||||||| | || |||| Sbjct 17304625 GTGGTTTAATTTGAAGCAAAGCGAAGAACCTTACCGGGGCTTGACATGCCACGAATCCTC 17304684 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | || | | ||||| || || | ||||||| ||||||| |||||| || Sbjct 17304685 TTGAAAGGGATGAGT-GCCTTC-TGGAACGCGGACACAGGTGGTGCATGGCTGTCGTTAG 17304742 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218 ||||||| ||||| ||||| |||||||||||||||||| Sbjct 17304743 CTCGTGTTGTGAGGTGTTGAGTTAAGTCCCGCAACGAG 17304780 Score = 111 bits (122), Expect = 5e-22 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 ||||||| ||| |||||||| ||| || || ||| || |||||||||||| Sbjct 7088580 ACAAAGGATCACGATCCCGCGAGGGTGAGCTAACTTCAAAAACCCGTCCTCAGTTCGGAT 7088521 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477 ||||| |||||||||| ||| ||||||| ||||||||||||||||| | |||| ||| | Sbjct 7088520 TGTAGGCTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATAC 7088461 Query 478 TACGGTGAATACGTTCCC 495 |||||||| ||||||| Sbjct 7088460 AGCGGTGAATCCGTTCCC 7088443 >seq31627 Length=2499 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 1193 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 1134 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 1133 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 1074 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 1073 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 1015 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 1014 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATAGGTACCCGGGCCCT 959 Score = 167 bits (184), Expect = 7e-39 Identities = 178/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1860 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 1801 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 1800 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 1750 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 1749 -ACAATAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 1691 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 1690 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 1637 >seq3 Length=31061273 Score = 197 bits (218), Expect = 4e-48 Identities = 177/218 (81%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||| |||||| |||| || ||| ||||||||||||||||||||| Sbjct 19045310 GCAAGAATGAAACTCAAAGAAATTGATGGGGGCC-GCATAAGCGGTGGAGCATGTGGTTT 19045252 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 ||||||| |||| |||||||||||||||| |||||||| | ||| ||||| || | Sbjct 19045251 AATTCGATGCAAAGCGAAGAACCTTACCATGGCTTGACATGCCGTGAATCCTCTTGAAAG 19045192 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 | ||| | ||||| ||| || | ||||||| ||||| | ||| |||| |||||| Sbjct 19045191 ACAGGAGT-GCCTTC-GGGAACGCGGACACAGGTGGTGCATTGCTGTTGTCAACTCGTGC 19045134 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACC 225 |||||| |||||||||||||||| ||| |||||||||| Sbjct 19045133 CGTGAGGTGTTGGGTTAAGTCCCACAAAGAGCGCAACC 19045096 Score = 75.2 bits (82), Expect = 3e-11 Identities = 54/61 (89%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7463743 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGG-GGCGCACAAGCGGTGGAGCAT 7463801 Query 61 G 61 | Sbjct 7463802 G 7463802 >seq5 Length=15272566 Score = 159 bits (176), Expect = 1e-36 Identities = 158/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 57 GCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACC 116 |||||||||||||||||| |||| || || |||||||||| |||||||| ||| Sbjct 714171 GCATGTGGTTTAATTCGATGCAAAGCAAAAAACCTTACCAGGGCTTGACATGTCGTGAAT 714230 Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176 ||||| || | |||| | || |||||| ||| ||| ||| |||| || ||||| Sbjct 714231 CCTCTTGAAAGGGAGGAGTGCC-TTCGGGA-ACACGAACACATGTGGTGCACGGCTGTCG 714288 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 ||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||| Sbjct 714289 TCAGCTCGTGTCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCATCGTGTTTAG 714348 Query 237 TTGCCATCATTAAGTTGGGCAC 258 |||||| | || | || || || Sbjct 714349 TTGCCAACGTTTATTTTGGAAC 714370 Score = 87.8 bits (96), Expect = 5e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 26 GGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAA 85 ||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||| | Sbjct 3046922 GGAATTGACGGGGGCCTGCACAAGCGTTGGAGCATGTGGTTTAATTCGATACAACGCGCA 3046981 Query 86 GAACCTTA 93 |||| || Sbjct 3046982 AAACCATA 3046989 >seq28698 Length=71069 Score = 132 bits (146), Expect = 1e-28 Identities = 85/93 (91%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 24284 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 24343 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93 |||||||||||||| |||| |||||||||| || Sbjct 24344 GTGGTTTAATTCGATGCAAAGCGAAGAACCATA 24376 >seq4 Length=28907061 Score = 131 bits (144), Expect = 5e-28 Identities = 130/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 332 GGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 ||| |||||| ||||||||||||| ||||||| |||| |||||||| ||| || Sbjct 25479969 GGCGACACAC-TGCTACAATGGACGGGACAAAGGATCGCGACCCCGCGAGGGTGAGCTAA 25480027 Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 || ||| || |||||||||||| |||| ||| |||||| ||| ||||||| |||| Sbjct 25480028 CTTCAAAAACCCGTCCTCAGTTCGGATCGTAGGCTGTAACTCGCCTACATGAAGCCGGAA 25480087 Query 452 TCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 25480088 TCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 25480133 Score = 80.6 bits (88), Expect = 8e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||| |||||||| ||||||||||||| ||| | |||| ||| Sbjct 3329397 ACAGGTGCTGCATGGCTGTCATCAGCTCGGGTCGTGAGATGTTTGGTCATGTCCTATAAC 3329338 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 3329337 GAGCGAAACCCT 3329326 Score = 78.8 bits (86), Expect = 3e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGT 483 ||||||||||| | |||||| |||||||||||||||||| ||||||||||| |||| Sbjct 24625189 TCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT 24625130 Query 484 GAATACGTTCC 494 ||||| || || Sbjct 24625129 GAATAGGTACC 24625119 >seq38496 Length=246243 Score = 91.5 bits (100), Expect = 4e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||| |||||||||||||| | Sbjct 3663 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCGGTGGAGTTT 3604 Query 61 GTGGTTTAAT 70 |||||||||| Sbjct 3603 GTGGTTTAAT 3594 >seq2 Length=32560536 Score = 91.5 bits (100), Expect = 4e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 26 GGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAA 85 ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| | Sbjct 25049667 GGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCA 25049608 Query 86 GAACCTTA 93 |||| || Sbjct 25049607 AAACCATA 25049600 >seq38597 Length=571498 Score = 86.0 bits (94), Expect = 2e-14 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 315 ATGCCCCTTATGATT-TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373 |||||| ||| || ||||| |||||||||||||||| ||||| ||| || |||| Sbjct 52663 ATGCCCTTTACCATCCTGGGCGACACACGTGCTACAATAGACAAGACATAGTATCGCGAC 52604 Query 374 ACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTC 433 ||||||| ||| ||| || ||| | | ||||||||||||| ||| ||||| ||| Sbjct 52603 CCCGCGAGAGTGAGCTAATTTCAAAAACTCGCCCTCAGTTCGGATTTTAGGCTGCAGCTC 52544 Query 434 GACTATATG 442 | ||| ||| Sbjct 52543 GCCTACATG 52535 Score = 82.4 bits (90), Expect = 2e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 315 ATGCCCCTTAT-GATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373 ||||| |||| | ||||| ||| ||||||||||||||||| ||||||| |||| Sbjct 89682 ATGCCTCTTACCGCCTTGGGTGACAAACGTGCTACAATGGACAGGACAAAGGATCGCGAC 89623 Query 374 ACCGCGA-GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACT 432 || ||| ||| || | ||| |||||| | || ||||||||||||||||| || | || Sbjct 89622 CCCACGATGGTGAA-CTAATTTCATAAACTCGTCCTCAGTTCGGATTGTAGGTTGAAGCT 89564 Query 433 CGACTA 438 || ||| Sbjct 89563 CGTCTA 89558 >seq7 Length=30551617 Score = 77.0 bits (84), Expect = 1e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19 ACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCA 78 ||| |||||||||||| | | || ||||||||||| || ||||||||||||||||| || Sbjct 29988565 ACTTAAAGGAATTGACAGAGGCCTGCACAAGCGGTAGAACATGTGGTTTAATTCGATACA 29988624 Query 79 ACGCGAAGAACCTTACC 95 || | | ||| ||||| Sbjct 29988625 ACATGCAAAACTTTACC 29988641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503412672960