Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq6 253 6e-65
seq31627 197 4e-48
seq3 197 4e-48
seq5 159 1e-36
seq28698 132 1e-28
seq4 131 5e-28
seq38496 91.5 4e-16
seq2 91.5 4e-16
seq38597 86.0 2e-14
seq7 77.0 1e-11
>seq6
Length=22682783
Score = 253 bits (280), Expect = 6e-65
Identities = 238/299 (80%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127
|||| || |||| |||||||||||||||| ||||| || || || ||||| || |
Sbjct 11989464 AATTTGATGCAAAGCGAAGAACCTTACCAGGGCTTGATATGCTGCGAATCCTCTTGAAAG 11989405
Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187
|||| | || |||||| || ||||||| ||||||| |||| ||||||||||
Sbjct 11989404 GGAGGAGTGCC-TTCGGGAACGCGAAC-ACAGGTGGTGCATGGCTGTCATCAGCTCGTGC 11989347
Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247
| |||| ||||||||||||||||||||||||||||||||||| | ||||||| || | ||
Sbjct 11989346 CATGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGTTTAGTTGTCAACGTT 11989287
Query 248 AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCA 307
|||| || || |||| ||| ||||||| || ||||||||||||| ||| |||||||
Sbjct 11989286 TAGTTTGGAACCCTAAACAAACTTCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCA 11989227
Query 308 AATCATCATGCCCCTTA-TGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365
| ||||||||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 11989226 AGTCATCATGCCCCTTACTGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGG 11989168
Score = 197 bits (218), Expect = 4e-48
Identities = 176/218 (81%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 17304565 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACAGGGGCCCGCACATGCGGTGGAGCAT 17304624
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
||||||||||| ||||||| ||||||||||||||| |||||||| | || ||||
Sbjct 17304625 GTGGTTTAATTTGAAGCAAAGCGAAGAACCTTACCGGGGCTTGACATGCCACGAATCCTC 17304684
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | || | | ||||| || || | ||||||| ||||||| |||||| ||
Sbjct 17304685 TTGAAAGGGATGAGT-GCCTTC-TGGAACGCGGACACAGGTGGTGCATGGCTGTCGTTAG 17304742
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218
||||||| ||||| ||||| ||||||||||||||||||
Sbjct 17304743 CTCGTGTTGTGAGGTGTTGAGTTAAGTCCCGCAACGAG 17304780
Score = 111 bits (122), Expect = 5e-22
Identities = 108/138 (78%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418
||||||| ||| |||||||| ||| || || ||| || ||||||||||||
Sbjct 7088580 ACAAAGGATCACGATCCCGCGAGGGTGAGCTAACTTCAAAAACCCGTCCTCAGTTCGGAT 7088521
Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477
||||| |||||||||| ||| ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 7088520 TGTAGGCTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATAC 7088461
Query 478 TACGGTGAATACGTTCCC 495
|||||||| |||||||
Sbjct 7088460 AGCGGTGAATCCGTTCCC 7088443
>seq31627
Length=2499
Score = 197 bits (218), Expect = 4e-48
Identities = 186/236 (79%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 1193 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 1134
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| |
Sbjct 1133 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 1074
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446
|| ||| || |||| | ||||||||||||||| ||||||||||| | ||||||
Sbjct 1073 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 1015
Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 1014 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATAGGTACCCGGGCCCT 959
Score = 167 bits (184), Expect = 7e-39
Identities = 178/234 (76%), Gaps = 17/234 (7%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1860 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 1801
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| ||||||| | |||
Sbjct 1800 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 1750
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
| | | | | ||| ||| || || || | ||||||| ||||||| ||
Sbjct 1749 -ACAATAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 1691
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 1690 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 1637
>seq3
Length=31061273
Score = 197 bits (218), Expect = 4e-48
Identities = 177/218 (81%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67
||||| |||||||||||| |||||| |||| || ||| |||||||||||||||||||||
Sbjct 19045310 GCAAGAATGAAACTCAAAGAAATTGATGGGGGCC-GCATAAGCGGTGGAGCATGTGGTTT 19045252
Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127
||||||| |||| |||||||||||||||| |||||||| | ||| ||||| || |
Sbjct 19045251 AATTCGATGCAAAGCGAAGAACCTTACCATGGCTTGACATGCCGTGAATCCTCTTGAAAG 19045192
Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187
| ||| | ||||| ||| || | ||||||| ||||| | ||| |||| ||||||
Sbjct 19045191 ACAGGAGT-GCCTTC-GGGAACGCGGACACAGGTGGTGCATTGCTGTTGTCAACTCGTGC 19045134
Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACC 225
|||||| |||||||||||||||| ||| ||||||||||
Sbjct 19045133 CGTGAGGTGTTGGGTTAAGTCCCACAAAGAGCGCAACC 19045096
Score = 75.2 bits (82), Expect = 3e-11
Identities = 54/61 (89%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 7463743 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGG-GGCGCACAAGCGGTGGAGCAT 7463801
Query 61 G 61
|
Sbjct 7463802 G 7463802
>seq5
Length=15272566
Score = 159 bits (176), Expect = 1e-36
Identities = 158/202 (78%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 57 GCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACC 116
|||||||||||||||||| |||| || || |||||||||| |||||||| |||
Sbjct 714171 GCATGTGGTTTAATTCGATGCAAAGCAAAAAACCTTACCAGGGCTTGACATGTCGTGAAT 714230
Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176
||||| || | |||| | || |||||| ||| ||| ||| |||| || |||||
Sbjct 714231 CCTCTTGAAAGGGAGGAGTGCC-TTCGGGA-ACACGAACACATGTGGTGCACGGCTGTCG 714288
Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236
||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||
Sbjct 714289 TCAGCTCGTGTCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCATCGTGTTTAG 714348
Query 237 TTGCCATCATTAAGTTGGGCAC 258
|||||| | || | || || ||
Sbjct 714349 TTGCCAACGTTTATTTTGGAAC 714370
Score = 87.8 bits (96), Expect = 5e-15
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 26 GGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAA 85
||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 3046922 GGAATTGACGGGGGCCTGCACAAGCGTTGGAGCATGTGGTTTAATTCGATACAACGCGCA 3046981
Query 86 GAACCTTA 93
|||| ||
Sbjct 3046982 AAACCATA 3046989
>seq28698
Length=71069
Score = 132 bits (146), Expect = 1e-28
Identities = 85/93 (91%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 24284 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 24343
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93
|||||||||||||| |||| |||||||||| ||
Sbjct 24344 GTGGTTTAATTCGATGCAAAGCGAAGAACCATA 24376
>seq4
Length=28907061
Score = 131 bits (144), Expect = 5e-28
Identities = 130/166 (78%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 332 GGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391
||| |||||| ||||||||||||| ||||||| |||| |||||||| ||| ||
Sbjct 25479969 GGCGACACAC-TGCTACAATGGACGGGACAAAGGATCGCGACCCCGCGAGGGTGAGCTAA 25480027
Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451
|| ||| || |||||||||||| |||| ||| |||||| ||| ||||||| ||||
Sbjct 25480028 CTTCAAAAACCCGTCCTCAGTTCGGATCGTAGGCTGTAACTCGCCTACATGAAGCCGGAA 25480087
Query 452 TCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496
||||||||||||| | |||| ||| | |||||||| ||||||||
Sbjct 25480088 TCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 25480133
Score = 80.6 bits (88), Expect = 8e-13
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||||||| ||||||| |||| |||||||| ||||||||||||| ||| | |||| |||
Sbjct 3329397 ACAGGTGCTGCATGGCTGTCATCAGCTCGGGTCGTGAGATGTTTGGTCATGTCCTATAAC 3329338
Query 216 GAGCGCAACCCT 227
||||| ||||||
Sbjct 3329337 GAGCGAAACCCT 3329326
Score = 78.8 bits (86), Expect = 3e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGT 483
||||||||||| | |||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 24625189 TCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT 24625130
Query 484 GAATACGTTCC 494
||||| || ||
Sbjct 24625129 GAATAGGTACC 24625119
>seq38496
Length=246243
Score = 91.5 bits (100), Expect = 4e-16
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 3663 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCGGTGGAGTTT 3604
Query 61 GTGGTTTAAT 70
||||||||||
Sbjct 3603 GTGGTTTAAT 3594
>seq2
Length=32560536
Score = 91.5 bits (100), Expect = 4e-16
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 26 GGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAA 85
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 25049667 GGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCA 25049608
Query 86 GAACCTTA 93
|||| ||
Sbjct 25049607 AAACCATA 25049600
>seq38597
Length=571498
Score = 86.0 bits (94), Expect = 2e-14
Identities = 97/129 (75%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 315 ATGCCCCTTATGATT-TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373
|||||| ||| || ||||| |||||||||||||||| ||||| ||| || ||||
Sbjct 52663 ATGCCCTTTACCATCCTGGGCGACACACGTGCTACAATAGACAAGACATAGTATCGCGAC 52604
Query 374 ACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTC 433
||||||| ||| ||| || ||| | | ||||||||||||| ||| ||||| |||
Sbjct 52603 CCCGCGAGAGTGAGCTAATTTCAAAAACTCGCCCTCAGTTCGGATTTTAGGCTGCAGCTC 52544
Query 434 GACTATATG 442
| ||| |||
Sbjct 52543 GCCTACATG 52535
Score = 82.4 bits (90), Expect = 2e-13
Identities = 96/126 (76%), Gaps = 3/126 (2%)
Strand=Plus/Minus
Query 315 ATGCCCCTTAT-GATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373
||||| |||| | ||||| ||| ||||||||||||||||| ||||||| ||||
Sbjct 89682 ATGCCTCTTACCGCCTTGGGTGACAAACGTGCTACAATGGACAGGACAAAGGATCGCGAC 89623
Query 374 ACCGCGA-GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACT 432
|| ||| ||| || | ||| |||||| | || ||||||||||||||||| || | ||
Sbjct 89622 CCCACGATGGTGAA-CTAATTTCATAAACTCGTCCTCAGTTCGGATTGTAGGTTGAAGCT 89564
Query 433 CGACTA 438
|| |||
Sbjct 89563 CGTCTA 89558
>seq7
Length=30551617
Score = 77.0 bits (84), Expect = 1e-11
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19 ACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCA 78
||| |||||||||||| | | || ||||||||||| || ||||||||||||||||| ||
Sbjct 29988565 ACTTAAAGGAATTGACAGAGGCCTGCACAAGCGGTAGAACATGTGGTTTAATTCGATACA 29988624
Query 79 ACGCGAAGAACCTTACC 95
|| | | ||| |||||
Sbjct 29988625 ACATGCAAAACTTTACC 29988641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503412672960
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