Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1 190 3e-46
seq5 152 8e-35
>seq1
Length=28142018
Score = 190 bits (210), Expect = 3e-46
Identities = 195/257 (76%), Gaps = 36/257 (14%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 1426474 ACTCGTTGAATACATCAGTGTTGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAAA 1426533
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
| |||||||||||||||||||| | ||| | || || ||
Sbjct 1426534 CTTGTTATTGCCTCAAACTTCCGT-----GGAGG------GT-----TA---------CC 1426568
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
||| | ||| |||||||||||| | || |||||||||||| | |||||||
Sbjct 1426569 TCCA--CGTAG---------CTATTTAGCAGGCTGAGTTCTCGTTCGTTAACAGAATTAA 1426617
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
| |||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1426618 CTAGACTAATCGCTCCACCAACTAAGAACAACCATGCACCACCACCCATAGAATCAAGAA 1426677
Query 242 AGAGCTATCAATCTGTC 258
|||||| ||| | ||||
Sbjct 1426678 AGAGCTCTCAGTATGTC 1426694
Score = 104 bits (114), Expect = 4e-20
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||| ||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 12274244 ACTCGTTGAATACATCAGCGTAGCGCACGTGCAGCCAAGAACATCTAAGGGCATCACAGA 12274303
Query 62 CCTGTTATTGCCTCAAACTT 81
||||||||||||||||||||
Sbjct 12274304 CCTGTTATTGCCTCAAACTT 12274323
>seq5
Length=15272566
Score = 152 bits (168), Expect = 8e-35
Identities = 101/111 (91%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC-AGACAAATCACTCCACC 200
||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 4658039 CTATTTAGCAGGTCAATGTCTCGTTCGTTAATGGAATTAACCTAGACAAATCGCTCCACC 4658098
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
||||||||||| ||| |||||||||||||||||||||| |||||||| |||
Sbjct 4658099 AACTAAGAACGACCAAGCACCACCACCCATAGAATCAAAAAAGAGCTCTCA 4658149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796498565331
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |