Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-46 seq5 152 8e-35 >seq1 Length=28142018 Score = 190 bits (210), Expect = 3e-46 Identities = 195/257 (76%), Gaps = 36/257 (14%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 1426474 ACTCGTTGAATACATCAGTGTTGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAAA 1426533 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||||| | ||| | || || || Sbjct 1426534 CTTGTTATTGCCTCAAACTTCCGT-----GGAGG------GT-----TA---------CC 1426568 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| | ||| |||||||||||| | || |||||||||||| | ||||||| Sbjct 1426569 TCCA--CGTAG---------CTATTTAGCAGGCTGAGTTCTCGTTCGTTAACAGAATTAA 1426617 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 | |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1426618 CTAGACTAATCGCTCCACCAACTAAGAACAACCATGCACCACCACCCATAGAATCAAGAA 1426677 Query 242 AGAGCTATCAATCTGTC 258 |||||| ||| | |||| Sbjct 1426678 AGAGCTCTCAGTATGTC 1426694 Score = 104 bits (114), Expect = 4e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||| ||||||| ||||| ||| ||||||||||||||||||||||| Sbjct 12274244 ACTCGTTGAATACATCAGCGTAGCGCACGTGCAGCCAAGAACATCTAAGGGCATCACAGA 12274303 Query 62 CCTGTTATTGCCTCAAACTT 81 |||||||||||||||||||| Sbjct 12274304 CCTGTTATTGCCTCAAACTT 12274323 >seq5 Length=15272566 Score = 152 bits (168), Expect = 8e-35 Identities = 101/111 (91%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC-AGACAAATCACTCCACC 200 ||||||||||||| || ||||||||||||| |||||||||| ||||||||| ||||||| Sbjct 4658039 CTATTTAGCAGGTCAATGTCTCGTTCGTTAATGGAATTAACCTAGACAAATCGCTCCACC 4658098 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||||||||| ||| |||||||||||||||||||||| |||||||| ||| Sbjct 4658099 AACTAAGAACGACCAAGCACCACCACCCATAGAATCAAAAAAGAGCTCTCA 4658149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796498565331