Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq28956 322 8e-86 seq6 194 3e-47 seq38624 141 2e-31 seq3 132 8e-29 seq33163 98.7 2e-18 seq38571 91.5 3e-16 >seq28956 Length=14041 Score = 322 bits (356), Expect = 8e-86 Identities = 219/246 (89%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 406 CTAACCTGTCTCACGACGGTCTAAACCTAGCTCACGTTCCCTATTGGTGGGGGAACAATC 347 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 |||| || |||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 346 CAACATTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCGACATCGAAGGATAAAAAA 287 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| Sbjct 286 GCAACGTCGCTATGAACGTTTAGCTGCCACAAGCCAGTTATCCATGTGGTAACTTTTCTG 227 Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTT 287 |||||||||| ||||||||||| || ||||||||||||||| ||| |||||| |||| Sbjct 226 ACACCTCTAGCTTCAAATTTCGAAGGTCTAAAGGATCGATAGACCATGCTTTCACGGTTC 167 Query 288 GTATTC 293 ||||| Sbjct 166 ATATTC 161 >seq6 Length=22682783 Score = 194 bits (214), Expect = 3e-47 Identities = 186/248 (75%), Gaps = 43/248 (17%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1601167 AACTAACCTGTCTCACGACGGTCTAAACCCAACTCACGTTCCCTATTGGTGGGTGAACAA 1601108 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||| |||||||||||||| Sbjct 1601107 TCCAAC----------------------------------------ATCGAAGGATCAAA 1601088 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||| Sbjct 1601087 AAGCAACGTCACTATGAACGCTTGGCTACCACAAGCC--TTATCCC-ATGGTAACTTTTC 1601031 Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 || |||||||||| ||||||| ||| || |||||||| ||| | ||| |||||| ||| Sbjct 1601030 TGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGACTAATATGTCACGCTTTCACGGT 1600971 Query 286 TTGTATTC 293 | |||||| Sbjct 1600970 TCGTATTC 1600963 >seq38624 Length=351353 Score = 141 bits (156), Expect = 2e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 188729 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAATGATAAAAAAGCAACGTCGCT 188670 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||| |||||||||||||| ||||||||||||| Sbjct 188669 ATGAACGTTTGGCTGCCACAAGTCAGTTATCCCTGT 188634 >seq3 Length=31061273 Score = 132 bits (146), Expect = 8e-29 Identities = 187/269 (70%), Gaps = 38/269 (14%) Strand=Plus/Plus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 ||||||| ||| | | | |||| |||||| |||||| ||| ||| | || | || | Sbjct 28682344 GAATTACTGTTGTGAC-ATTGTCACCAGTAGTGTAAAAATAATCTGGCCCACAATAGTAT 28682402 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||| || |||| ||||| |||| || |||||| |||| ||| ||| ||||| ||||| Sbjct 28682403 AAACTCAACTCATGTTCCTTATTGGTCGGTGAATAATC-AACACTTGGTGAATTATGCTT 28682461 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | ||||| |||||||||||||| ||||||||||| Sbjct 28682462 CACAATGATCGGAAGAGCCGACATTGAAGGATCAAA------------------------ 28682497 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT-TCTGGCACCTCTAGCCTCAAATTTC 248 |||||||||| |||||||||||| |||| |||||||||| ||||||| Sbjct 28682498 -----------CCAGTTATCCATGTGGTAACTTTCTCTGACACCTCTAGCTTCAAATTCT 28682546 Query 249 GAGGGACTAAAGGATCGATAGGCCACACT 277 || || ||||| |||||||| | |||||| Sbjct 28682547 GAAGGTCTAAATGATCGATAAGTCACACT 28682575 >seq33163 Length=2118 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||| | Sbjct 424 TAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTTTAAAGGATCGATAGGCCACGC 365 Query 277 TTTCATGGTTTGTATTC 293 ||||| |||| |||||| Sbjct 364 TTTCACGGTTCGTATTC 348 >seq38571 Length=172913 Score = 91.5 bits (100), Expect = 3e-16 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 197 CAAGCCAGTTATCCCTGTGGTAACTTT-TCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 ||| |||||||||| |||||||||||| |||| |||||||||| ||||||| || || | Sbjct 118176 CAAACCAGTTATCCATGTGGTAACTTTCTCTGACACCTCTAGCTTCAAATTCTGAAGGTC 118235 Query 256 TAAAGGATCGATAGGCCACACT 277 |||| |||||||| | |||||| Sbjct 118236 TAAATGATCGATAAGTCACACT 118257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854066348256