Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq28956 322 8e-86
seq6 194 3e-47
seq38624 141 2e-31
seq3 132 8e-29
seq33163 98.7 2e-18
seq38571 91.5 3e-16
>seq28956
Length=14041
Score = 322 bits (356), Expect = 8e-86
Identities = 219/246 (89%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107
||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 406 CTAACCTGTCTCACGACGGTCTAAACCTAGCTCACGTTCCCTATTGGTGGGGGAACAATC 347
Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167
|||| || |||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 346 CAACATTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCGACATCGAAGGATAAAAAA 287
Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
|||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 286 GCAACGTCGCTATGAACGTTTAGCTGCCACAAGCCAGTTATCCATGTGGTAACTTTTCTG 227
Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTT 287
|||||||||| ||||||||||| || ||||||||||||||| ||| |||||| ||||
Sbjct 226 ACACCTCTAGCTTCAAATTTCGAAGGTCTAAAGGATCGATAGACCATGCTTTCACGGTTC 167
Query 288 GTATTC 293
|||||
Sbjct 166 ATATTC 161
>seq6
Length=22682783
Score = 194 bits (214), Expect = 3e-47
Identities = 186/248 (75%), Gaps = 43/248 (17%)
Strand=Plus/Minus
Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1601167 AACTAACCTGTCTCACGACGGTCTAAACCCAACTCACGTTCCCTATTGGTGGGTGAACAA 1601108
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
|||||| ||||||||||||||
Sbjct 1601107 TCCAAC----------------------------------------ATCGAAGGATCAAA 1601088
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1601087 AAGCAACGTCACTATGAACGCTTGGCTACCACAAGCC--TTATCCC-ATGGTAACTTTTC 1601031
Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285
|| |||||||||| ||||||| ||| || |||||||| ||| | ||| |||||| |||
Sbjct 1601030 TGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGACTAATATGTCACGCTTTCACGGT 1600971
Query 286 TTGTATTC 293
| ||||||
Sbjct 1600970 TCGTATTC 1600963
>seq38624
Length=351353
Score = 141 bits (156), Expect = 2e-31
Identities = 89/96 (93%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 188729 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAATGATAAAAAAGCAACGTCGCT 188670
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214
||||||| |||||||||||||| |||||||||||||
Sbjct 188669 ATGAACGTTTGGCTGCCACAAGTCAGTTATCCCTGT 188634
>seq3
Length=31061273
Score = 132 bits (146), Expect = 8e-29
Identities = 187/269 (70%), Gaps = 38/269 (14%)
Strand=Plus/Plus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
||||||| ||| | | | |||| |||||| |||||| ||| ||| | || | || |
Sbjct 28682344 GAATTACTGTTGTGAC-ATTGTCACCAGTAGTGTAAAAATAATCTGGCCCACAATAGTAT 28682402
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
|||| || |||| ||||| |||| || |||||| |||| ||| ||| ||||| |||||
Sbjct 28682403 AAACTCAACTCATGTTCCTTATTGGTCGGTGAATAATC-AACACTTGGTGAATTATGCTT 28682461
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189
| ||||| |||||||||||||| |||||||||||
Sbjct 28682462 CACAATGATCGGAAGAGCCGACATTGAAGGATCAAA------------------------ 28682497
Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT-TCTGGCACCTCTAGCCTCAAATTTC 248
|||||||||| |||||||||||| |||| |||||||||| |||||||
Sbjct 28682498 -----------CCAGTTATCCATGTGGTAACTTTCTCTGACACCTCTAGCTTCAAATTCT 28682546
Query 249 GAGGGACTAAAGGATCGATAGGCCACACT 277
|| || ||||| |||||||| | ||||||
Sbjct 28682547 GAAGGTCTAAATGATCGATAAGTCACACT 28682575
>seq33163
Length=2118
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276
||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||| |
Sbjct 424 TAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTTTAAAGGATCGATAGGCCACGC 365
Query 277 TTTCATGGTTTGTATTC 293
||||| |||| ||||||
Sbjct 364 TTTCACGGTTCGTATTC 348
>seq38571
Length=172913
Score = 91.5 bits (100), Expect = 3e-16
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 197 CAAGCCAGTTATCCCTGTGGTAACTTT-TCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255
||| |||||||||| |||||||||||| |||| |||||||||| ||||||| || || |
Sbjct 118176 CAAACCAGTTATCCATGTGGTAACTTTCTCTGACACCTCTAGCTTCAAATTCTGAAGGTC 118235
Query 256 TAAAGGATCGATAGGCCACACT 277
|||| |||||||| | ||||||
Sbjct 118236 TAAATGATCGATAAGTCACACT 118257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854066348256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |