Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq20748 107 2e-21 seq2 96.9 4e-18 seq7253 80.6 3e-13 seq7 80.6 3e-13 seq38628 78.8 1e-12 seq4 77.0 4e-12 seq36022 73.4 4e-11 >seq20748 Length=620 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 491 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 432 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 431 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 372 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 371 GACAAGGAATTTCGCTACCTTAGGACAGTTA 341 >seq2 Length=32560536 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693080 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 1693021 Query 173 A 173 | Sbjct 1693020 A 1693020 >seq7253 Length=1156 Score = 80.6 bits (88), Expect = 3e-13 Identities = 86/118 (73%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 51 TCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNN 110 || |||||||||| || | | |||||||| | | || | ||||||| Sbjct 243 TCTGCATCTTCACGGAGAATTTAATTTCACCGGGTCCATGTCGGAGACAGCAGGATAGTC 302 Query 111 NNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 ||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||| Sbjct 303 GTTACACCATTCGTGCAAGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGAC 360 >seq7 Length=30551617 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||| ||||| |||||||||||||||||| |||||||| |||||||||||| Sbjct 3499418 TTCGTGCGGGTCGTAACTTACCCGACAAGGAACTTCGCTACATTAGGACCGTTA 3499365 >seq38628 Length=344691 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||||| |||||||||||||| ||||| | ||||||||||||||||||||||||| ||| Sbjct 13945 TACACTATTCGTGCAGGTCGCTACTTATGCTACAAGGAATTTCGCTACCTTAGGACAGTT 14004 Query 173 A 173 | Sbjct 14005 A 14005 >seq4 Length=28907061 Score = 77.0 bits (84), Expect = 4e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 162 ||| || ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 24475291 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 24475242 >seq36022 Length=2319 Score = 73.4 bits (80), Expect = 4e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 162 ||| || ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1632 TACGCCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAATTTCGCTACCT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546992990649