Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq20748 107 2e-21
seq2 96.9 4e-18
seq7253 80.6 3e-13
seq7 80.6 3e-13
seq38628 78.8 1e-12
seq4 77.0 4e-12
seq36022 73.4 4e-11
>seq20748
Length=620
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 491 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 432
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 431 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 372
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 371 GACAAGGAATTTCGCTACCTTAGGACAGTTA 341
>seq2
Length=32560536
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693080 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 1693021
Query 173 A 173
|
Sbjct 1693020 A 1693020
>seq7253
Length=1156
Score = 80.6 bits (88), Expect = 3e-13
Identities = 86/118 (73%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 51 TCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNN 110
|| |||||||||| || | | |||||||| | | || | |||||||
Sbjct 243 TCTGCATCTTCACGGAGAATTTAATTTCACCGGGTCCATGTCGGAGACAGCAGGATAGTC 302
Query 111 NNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168
||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||
Sbjct 303 GTTACACCATTCGTGCAAGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGAC 360
>seq7
Length=30551617
Score = 80.6 bits (88), Expect = 3e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 3499418 TTCGTGCGGGTCGTAACTTACCCGACAAGGAACTTCGCTACATTAGGACCGTTA 3499365
>seq38628
Length=344691
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||||| |||||||||||||| ||||| | ||||||||||||||||||||||||| |||
Sbjct 13945 TACACTATTCGTGCAGGTCGCTACTTATGCTACAAGGAATTTCGCTACCTTAGGACAGTT 14004
Query 173 A 173
|
Sbjct 14005 A 14005
>seq4
Length=28907061
Score = 77.0 bits (84), Expect = 4e-12
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 162
||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 24475291 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 24475242
>seq36022
Length=2319
Score = 73.4 bits (80), Expect = 4e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 162
||| || ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1632 TACGCCTTTCGTGCGGGTCGTAACTTACCCGACAAGGAATTTCGCTACCT 1583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546992990649
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |