Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq31627 205 2e-50 seq7 190 4e-46 seq38650 168 1e-39 seq28700 154 3e-35 seq38481 150 4e-34 seq2720 123 5e-26 seq6 111 3e-22 seq3 91.5 3e-16 >seq31627 Length=2499 Score = 205 bits (226), Expect = 2e-50 Identities = 174/211 (82%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 2290 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 2347 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 2348 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 2407 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 2408 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 2467 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || ||||||||| Sbjct 2468 GACCAACTACCTAATACTACGCAGGCTCATC 2498 >seq7 Length=30551617 Score = 190 bits (210), Expect = 4e-46 Identities = 145/170 (85%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||| ||||||||||||| || |||||||||||||||||| Sbjct 26859459 CACGCGGCATTG-CTCCGTCAGACTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 26859517 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||| ||| | |||||| |||||||||||||| | |||| | Sbjct 26859518 CCGTAGGAGTCTGGGCCTTGTCTTAGTCCTAGTGTGGCTGATCATCCTCTCTGGCCAGCT 26859577 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||| | ||| |||||| |||||||||||||||| ||| Sbjct 26859578 ACTGATCATCGCCTTGATAAGCTATTACCCCACCAACTAGCTAATCAGAC 26859627 Score = 98.7 bits (108), Expect = 2e-18 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||||||| |||||| ||| |||| ||||||||| ||| ||||||| Sbjct 4577261 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCA-CGCCTTGGTAAGCTATTACCT 4577203 Query 179 CACCAACTAGCTAATCCGA 197 |||||||||||||||| || Sbjct 4577202 CACCAACTAGCTAATCAGA 4577184 >seq38650 Length=293386 Score = 168 bits (186), Expect = 1e-39 Identities = 230/316 (73%), Gaps = 25/316 (8%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 95789 CACGTGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCGCACTGCTGCCTC 95847 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC---- 144 || ||||||| ||| || ||||||||| |||||||| ||||||||| | || |||| Sbjct 95848 CCTTAGGAGTTTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCGTTTCGGACCAGCT 95907 Query 145 AGTTACGGAT---CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTA 201 || ||| ||| | ||||||||| ||| ||||||||||||||||||||||| ||| | Sbjct 95908 AGCTACTGATCACCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGT- 95966 Query 202 GGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261 | | || | | || || ||| ||||| | | | | | || | || Sbjct 95967 -GAACCCCTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CCTACGGGG 96014 Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTAC 319 ||||||| |||||||| ||| ||||| || ||| ||||| ||| || | |||| Sbjct 96015 TATTAGCAGCCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGTTCTTACACGTTAC 96072 Query 320 TCACCCGTCCGCCGCT 335 ||||||||| ||| || Sbjct 96073 TCACCCGTCAGCCACT 96088 >seq28700 Length=70328 Score = 154 bits (170), Expect = 3e-35 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 34396 CCATTGTGGAAAATTCCCCACTGCCGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTTCC 34455 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | |||||||||||||| ||| |||| ||| |||| || |||||| | | ||||||| Sbjct 34456 AATGTGACTGATCATCATCTTGCACCAACTACTGATCATCATCTTGGTAAACTATTACCT 34515 Query 179 CACCAACTAGCTAAT 193 ||||||||||||||| Sbjct 34516 CACCAACTAGCTAAT 34530 >seq38481 Length=269114 Score = 150 bits (166), Expect = 4e-34 Identities = 222/307 (72%), Gaps = 22/307 (7%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||||||||||||||||| || ||| || ||| ||| Sbjct 202296 CACGTGGCATTG-CTCTATCAGGCTTTCGCCCATTGCAGAAAATTTCCGTA-GCTACCTT 202353 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||||||| ||| ||||||||| ||| |||| ||||||||||||| ||||| | Sbjct 202354 TAGTAGGAGTCTGAACCTTGTCTCAGTCCCAATGTGGTTGATCATCCTCTCGGACCAACT 202413 Query 149 ACGGATCGTCGCCTTG-GTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCA 207 || |||| |||||||| | | | |||||||||||||||||||||| ||| | |||| Sbjct 202414 ACTGATCATCGCCTTGCTTAAACTATTACCTCACCAACTAGCTAATAAGACGTGAGCTC- 202472 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTA 266 ||| | | | || ||| ||| | | || ||| | || ||||||| Sbjct 202473 -CTGTTTG----------GGTGGATTCCTCCTTCCGCTCCTTAG--CCTACAAGGTATTA 202519 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACC 324 ||| |||||||| || ||||| || ||| |||| || || |||||||||||| Sbjct 202520 GCGCCCGTTTCCAGCTATTGTCCCC--CTCCCAGGGGCACGTTATTAAGCATTACTCACC 202577 Query 325 CGTCCGC 331 ||||||| Sbjct 202578 CGTCCGC 202584 >seq2720 Length=641 Score = 123 bits (136), Expect = 5e-26 Identities = 116/146 (79%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || |||| |||| || |||||||||||||||||| | |||| |||||| |||||| Sbjct 416 CATGCGGTATTG-CTCCGTCAGGCTTTCGCCCATTGCGGGAAATTCTCCACTGTTGCCTC 358 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | ||||||||||| || | ||||||| |||||||| |||||||||||||| ||||| | Sbjct 357 ACATAGGAGTCTGGGCCTTATCTCAGTCCCAGTGTGGCTGATCATCCTCTCGAACCAGCT 298 Query 149 ACGGATCGTCGCCTTGGTGAGCCATT 174 || || || ||||||| ||| ||| Sbjct 297 ACTGA---TCTCCTTGGTAAGCTATT 275 >seq6 Length=22682783 Score = 111 bits (122), Expect = 3e-22 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150 ||||||| |||| ||||||||| ||||||| |||||||||||||| | ||||||| Sbjct 2808157 GTAGGAGCCTGGGTTTTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGAATCAGTTAC 2808216 Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTA 191 |||| || ||||||| ||| |||||||||||||||||||| Sbjct 2808217 TGATCATCACCTTGGTTAGCTATTACCTCACCAACTAGCTA 2808257 >seq3 Length=31061273 Score = 91.5 bits (100), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 22795207 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 22795150 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||||| ||||||||||||||| |||| Sbjct 22795149 CCATTGTCCAAGGTTCCCCACTGCTGCCCCCCG 22795117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071581373280