Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 205 2e-50
seq7 190 4e-46
seq38650 168 1e-39
seq28700 154 3e-35
seq38481 150 4e-34
seq2720 123 5e-26
seq6 111 3e-22
seq3 91.5 3e-16
>seq31627
Length=2499
Score = 205 bits (226), Expect = 2e-50
Identities = 174/211 (82%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 2290 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 2347
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 2348 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 2407
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 2408 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 2467
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209
|||||||| ||||| | || |||||||||
Sbjct 2468 GACCAACTACCTAATACTACGCAGGCTCATC 2498
>seq7
Length=30551617
Score = 190 bits (210), Expect = 4e-46
Identities = 145/170 (85%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||| ||||||||||||| || ||||||||||||||||||
Sbjct 26859459 CACGCGGCATTG-CTCCGTCAGACTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 26859517
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| || ||||| ||| | |||||| |||||||||||||| | |||| |
Sbjct 26859518 CCGTAGGAGTCTGGGCCTTGTCTTAGTCCTAGTGTGGCTGATCATCCTCTCTGGCCAGCT 26859577
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
|| |||| |||||||| | ||| |||||| |||||||||||||||| |||
Sbjct 26859578 ACTGATCATCGCCTTGATAAGCTATTACCCCACCAACTAGCTAATCAGAC 26859627
Score = 98.7 bits (108), Expect = 2e-18
Identities = 70/79 (89%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||||||| |||||| ||| |||| ||||||||| ||| |||||||
Sbjct 4577261 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCA-CGCCTTGGTAAGCTATTACCT 4577203
Query 179 CACCAACTAGCTAATCCGA 197
|||||||||||||||| ||
Sbjct 4577202 CACCAACTAGCTAATCAGA 4577184
>seq38650
Length=293386
Score = 168 bits (186), Expect = 1e-39
Identities = 230/316 (73%), Gaps = 25/316 (8%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||| ||||||| || |||||||||||||||||| || ||||| ||||||||||||
Sbjct 95789 CACGTGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCGCACTGCTGCCTC 95847
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC---- 144
|| ||||||| ||| || ||||||||| |||||||| ||||||||| | || ||||
Sbjct 95848 CCTTAGGAGTTTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCGTTTCGGACCAGCT 95907
Query 145 AGTTACGGAT---CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTA 201
|| ||| ||| | ||||||||| ||| ||||||||||||||||||||||| ||| |
Sbjct 95908 AGCTACTGATCACCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGT- 95966
Query 202 GGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261
| | || | | || || ||| ||||| | | | | | || | ||
Sbjct 95967 -GAACCCCTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CCTACGGGG 96014
Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTAC 319
||||||| |||||||| ||| ||||| || ||| ||||| ||| || | ||||
Sbjct 96015 TATTAGCAGCCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGTTCTTACACGTTAC 96072
Query 320 TCACCCGTCCGCCGCT 335
||||||||| ||| ||
Sbjct 96073 TCACCCGTCAGCCACT 96088
>seq28700
Length=70328
Score = 154 bits (170), Expect = 3e-35
Identities = 115/135 (85%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 34396 CCATTGTGGAAAATTCCCCACTGCCGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTTCC 34455
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
| |||||||||||||| ||| |||| ||| |||| || |||||| | | |||||||
Sbjct 34456 AATGTGACTGATCATCATCTTGCACCAACTACTGATCATCATCTTGGTAAACTATTACCT 34515
Query 179 CACCAACTAGCTAAT 193
|||||||||||||||
Sbjct 34516 CACCAACTAGCTAAT 34530
>seq38481
Length=269114
Score = 150 bits (166), Expect = 4e-34
Identities = 222/307 (72%), Gaps = 22/307 (7%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||| ||||||| || ||||||||||||||||||| || ||| || ||| |||
Sbjct 202296 CACGTGGCATTG-CTCTATCAGGCTTTCGCCCATTGCAGAAAATTTCCGTA-GCTACCTT 202353
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
||||||||||| ||| ||||||||| ||| |||| ||||||||||||| ||||| |
Sbjct 202354 TAGTAGGAGTCTGAACCTTGTCTCAGTCCCAATGTGGTTGATCATCCTCTCGGACCAACT 202413
Query 149 ACGGATCGTCGCCTTG-GTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCA 207
|| |||| |||||||| | | | |||||||||||||||||||||| ||| | ||||
Sbjct 202414 ACTGATCATCGCCTTGCTTAAACTATTACCTCACCAACTAGCTAATAAGACGTGAGCTC- 202472
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTA 266
||| | | | || ||| ||| | | || ||| | || |||||||
Sbjct 202473 -CTGTTTG----------GGTGGATTCCTCCTTCCGCTCCTTAG--CCTACAAGGTATTA 202519
Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACC 324
||| |||||||| || ||||| || ||| |||| || || ||||||||||||
Sbjct 202520 GCGCCCGTTTCCAGCTATTGTCCCC--CTCCCAGGGGCACGTTATTAAGCATTACTCACC 202577
Query 325 CGTCCGC 331
|||||||
Sbjct 202578 CGTCCGC 202584
>seq2720
Length=641
Score = 123 bits (136), Expect = 5e-26
Identities = 116/146 (79%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|| |||| |||| || |||||||||||||||||| | |||| |||||| ||||||
Sbjct 416 CATGCGGTATTG-CTCCGTCAGGCTTTCGCCCATTGCGGGAAATTCTCCACTGTTGCCTC 358
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
| ||||||||||| || | ||||||| |||||||| |||||||||||||| ||||| |
Sbjct 357 ACATAGGAGTCTGGGCCTTATCTCAGTCCCAGTGTGGCTGATCATCCTCTCGAACCAGCT 298
Query 149 ACGGATCGTCGCCTTGGTGAGCCATT 174
|| || || ||||||| ||| |||
Sbjct 297 ACTGA---TCTCCTTGGTAAGCTATT 275
>seq6
Length=22682783
Score = 111 bits (122), Expect = 3e-22
Identities = 85/101 (84%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150
||||||| |||| ||||||||| ||||||| |||||||||||||| | |||||||
Sbjct 2808157 GTAGGAGCCTGGGTTTTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGAATCAGTTAC 2808216
Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTA 191
|||| || ||||||| ||| ||||||||||||||||||||
Sbjct 2808217 TGATCATCACCTTGGTTAGCTATTACCTCACCAACTAGCTA 2808257
>seq3
Length=31061273
Score = 91.5 bits (100), Expect = 3e-16
Identities = 78/93 (84%), Gaps = 4/93 (4%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 22795207 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 22795150
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91
||||||||||| ||||||||||||||| ||||
Sbjct 22795149 CCATTGTCCAAGGTTCCCCACTGCTGCCCCCCG 22795117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071581373280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |