Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq9814 111 6e-22 seq34162 102 3e-19 seq20907 98.7 4e-18 seq1 93.3 2e-16 seq2 84.2 8e-14 seq35048 75.2 4e-11 >seq9814 Length=918 Score = 111 bits (122), Expect = 6e-22 Identities = 115/148 (78%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 435 AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCAC 489 |||||| || |||||| ||| |||||| ||| | | |||||| || ||| ||| Sbjct 732 AAAGGCTCTA-AGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 674 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| |||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 673 TCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGA 614 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||| || ||||||||| |||||||||| Sbjct 613 GGAATACTTAGGCTTAGAGGGTGGTCCC 586 >seq34162 Length=1877 Score = 102 bits (112), Expect = 3e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| | ||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 565 GGTTTCATGCTCTATTTCACTCTTTGCCAGGGATTCTTTTCACCTTTCCCTCACGGTACT 624 Query 530 TGTCCGCTATCGGTCACCAAGGAGTA 555 | |||||||||||||| ||||||| Sbjct 625 ATTTCGCTATCGGTCACCCAGGAGTA 650 >seq20907 Length=607 Score = 98.7 bits (108), Expect = 4e-18 Identities = 111/148 (75%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC----CCCGCCAGGGG 502 |||| || ||||||| ||| |||||||||||| ||||||||||| | | ||| Sbjct 588 GCTCTGAATGATTGTAAGCAAATGGTTTCAGGTTCTATTTCACTCTGATCACCTCAG--- 532 Query 503 TACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGC 562 | |||||||||||||||||||||||||||| | |||||| || | |||||||||| Sbjct 531 TTCTTTTCACCTTTCCCTCACGGTACTTGTGCACTATCGATCTGGTATTAGTATTTAGGG 472 Query 563 TTAACGGGTGGTCCCGCCAGATTCACAC 590 || |||||| || |||||| || Sbjct 471 TTGGATCGTGGTCGACCCGGATTCAGAC 444 >seq1 Length=28142018 Score = 93.3 bits (102), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||| || ||||||||||||||| | | | ||| || |||| |||||| Sbjct 13347753 GCTGCGCCTCAACGCAATTTGGGGAGAACCAGCTAGCTCTAGGTTCGAGTGGCATTTCAC 13347694 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| ||||| || ||||||| | ||| ||||||| ||||||| | Sbjct 13347693 CGCTAACCACAACTCATCGGCTGGTTTTTCAATATCAGTTGGTTCGGACCTCCACTTAAT 13347634 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGA-TAGATCACTTCGCTTCGGGTC 305 | ||| || ||| |||| |||| | |||||||| | ||||| || Sbjct 13347633 TTCACCTAAGC-TCATCCTGGTCATGAATTAGATCACCCAGATTCGGATC 13347585 >seq2 Length=32560536 Score = 84.2 bits (92), Expect = 8e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| | |||||||||||| |||||| || ||||||| |||||||||| | |||| Sbjct 20289197 GGTTTCATGCTCTATTTCACTCCTCGCCAGTAGTTCTTTTCAGCTTTCCCTCAGGATACT 20289256 Query 530 TGTCCGCTATCGGTCACCAAGGAGTA 555 | |||||| |||||| ||||||| Sbjct 20289257 ACTTCGCTATGAGTCACCCAGGAGTA 20289282 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 185 TTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGT 244 || ||||||||||| || |||| ||||||||| | ||| | || || ||||||||||| Sbjct 27237159 TTTGCCTTTCACCCTTAGTCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGT 27237100 Query 245 CCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290 |||||| | | ||| | | ||||||||||| ||||| |||||| Sbjct 27237099 CCTCCAAGGCCTATTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 27237053 >seq35048 Length=3126 Score = 75.2 bits (82), Expect = 4e-11 Identities = 107/150 (71%), Gaps = 12/150 (8%) Strand=Plus/Minus Query 397 GCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGG 456 |||||||||| || |||||||| ||| ||| || | || | |||| || Sbjct 286 GCTCATTCTTTAACAGGCACGCGGTC----GGTGCCCCA---GCTC-----CTCCCACTA 239 Query 457 ATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTT 516 ||| | || ||||||||| || |||||||||||| || | || | ||| |||||||| Sbjct 238 TTTGAAAGCTTATGGTTTCATGTTCTATTTCACTCCTCGACGAGGATTCTTGTCACCTTT 179 Query 517 CCCTCACGGTACTTGTCCGCTATCGGTCAC 546 | ||||||||||| | | | |||| |||| Sbjct 178 CTCTCACGGTACTACTTCACAATCGATCAC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816890209024