Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq20907 132 1e-28 seq9814 102 2e-19 seq34162 93.3 1e-16 seq35048 84.2 5e-14 seq3 75.2 3e-11 seq2 73.4 1e-10 >seq20907 Length=607 Score = 132 bits (146), Expect = 1e-28 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||| | || ||||| ||| | ||||||||| |||||||||||| || || |||| Sbjct 588 GCTCTGAATGATTGTAAGCAAATGGTTTCAGGTTCTATTTCACTCTGATCACCTCAGTTC 529 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| |||||||||||||||||| || |||||||| || | | |||||||||| ||| Sbjct 528 TTTTCACCTTTCCCTCACGGTACTTGTGCACTATCGATCTGGTATTAGTATTTAGGGTTG 469 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||||| ||| ||||||||| || |||||| ||| ||||||| Sbjct 468 GATCGTGGTCGACCCGGATTCAGACAGGATTCCTCGTGTCCCGCCCTACTC 418 >seq9814 Length=918 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 712 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 654 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 653 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 594 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 593 GTGGTCCCCC 584 >seq34162 Length=1877 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || |||||||||| | |||||||||||| | | ||| |||||||| ||||||||||| Sbjct 559 GCTTACGGTTTCATGCTCTATTTCACTCTTTGC-CAGGGATTCTTTTCACCTTTCCCTCA 617 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||| ||| |||||||||| ||| |||| Sbjct 618 CGGTACTATTTCGCTATCGGTCACCCAGGAGTA 650 >seq35048 Length=3126 Score = 84.2 bits (92), Expect = 5e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG-TTC 308 |||||||| ||| | || || ||||||| | ||||||||||||| || || || ||| Sbjct 247 CTCCCACTATTTGAAAGCTTATGGTTTCATGTTCTATTTCACTCC--TCGACGAGGATTC 190 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 348 || || |||||| |||||||||||| ||||| |||| ||| Sbjct 189 TTGTCACCTTTCTCTCACGGTACTACTTCACAATCGATCA 150 >seq3 Length=31061273 Score = 75.2 bits (82), Expect = 3e-11 Identities = 75/95 (79%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG-GGGTTC 308 |||||||| ||| | || || ||||||| | ||||||||||| |||| || || ||| Sbjct 26513840 CTCCCACTATTTGAAAGCTTATGGTTTCATGTTCTATTTCACT--CCTCGACGAGGATTC 26513897 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATC 343 || || |||||| |||| ||||||| ||||| ||| Sbjct 26513898 TTGTCACCTTTCTCTCATGGTACTACTTCACAATC 26513932 >seq2 Length=32560536 Score = 73.4 bits (80), Expect = 1e-10 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||||| | ||||||||||||| | | | | ||||||||| |||||||||| | Sbjct 20289194 TACGGTTTCATGCTCTATTTCACTCCTCGC-CAGTAGTTCTTTTCAGCTTTCCCTCAGGA 20289252 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTA 358 ||||| ||| |||| |||| ||| |||| Sbjct 20289253 TACTACTTCGCTATGAGTCACCCAGGAGTA 20289282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241115142784