Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq31627 123 2e-26 seq6 78.8 8e-13 >seq31627 Length=2499 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 1027 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 1085 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 1086 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 1145 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 1146 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 1185 >seq6 Length=22682783 Score = 78.8 bits (86), Expect = 8e-13 Identities = 66/80 (83%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCA-TAAGGGCCATGAGGACTTGACGTCATCCCC 141 |||||||| ||||||| |||| || |||||| ||||| ||||||||||||||| | Sbjct 11989180 CCATTGTAGCACGTGTGTCGCCCAGGGCAGTAAGGGGCATGATGACTTGACGTCATCCTC 11989239 Query 142 ACCTTCCTCCGGTTTGTCAC 161 |||||||||||| || |||| Sbjct 11989240 ACCTTCCTCCGGCTTATCAC 11989259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415842624470