Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 123 2e-26
seq6 78.8 8e-13
>seq31627
Length=2499
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 1027 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 1085
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 1086 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 1145
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 1146 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 1185
>seq6
Length=22682783
Score = 78.8 bits (86), Expect = 8e-13
Identities = 66/80 (83%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCA-TAAGGGCCATGAGGACTTGACGTCATCCCC 141
|||||||| ||||||| |||| || |||||| ||||| ||||||||||||||| |
Sbjct 11989180 CCATTGTAGCACGTGTGTCGCCCAGGGCAGTAAGGGGCATGATGACTTGACGTCATCCTC 11989239
Query 142 ACCTTCCTCCGGTTTGTCAC 161
|||||||||||| || ||||
Sbjct 11989240 ACCTTCCTCCGGCTTATCAC 11989259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415842624470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |