Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 141 2e-31
seq7 80.6 4e-13
>seq31627
Length=2499
Score = 141 bits (156), Expect = 2e-31
Identities = 207/290 (71%), Gaps = 12/290 (4%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 1973 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 2032
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 2033 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 2092
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176
||||| || ||||| | ||| | | ||| | | | || ||||| | |
Sbjct 2093 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCC 2151
Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235
|| ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| |
Sbjct 2152 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 2205
Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| ||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 2206 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 2255
>seq7
Length=30551617
Score = 80.6 bits (88), Expect = 4e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 204 TACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGT 263
||| |||||| | |||||||||||||||| ||| | |||||||||||||||||||
Sbjct 30272928 TACGCCCAATCATTCCGGATAACGCTTGCATCCTCTATCTTACCGCGGCTGCTGGCACAG 30272987
Query 264 AGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||| | | ||||||||| ||| ||
Sbjct 30272988 AGTTAACTGATGCTTATTCCCCAGATA 30273014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828486459521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |