Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq31627 141 2e-31 seq7 80.6 4e-13 >seq31627 Length=2499 Score = 141 bits (156), Expect = 2e-31 Identities = 207/290 (71%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 1973 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 2032 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 2033 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 2092 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| | | ||| | | | || ||||| | | Sbjct 2093 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCC 2151 Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| | Sbjct 2152 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 2205 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 2206 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 2255 >seq7 Length=30551617 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204 TACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGT 263 ||| |||||| | |||||||||||||||| ||| | ||||||||||||||||||| Sbjct 30272928 TACGCCCAATCATTCCGGATAACGCTTGCATCCTCTATCTTACCGCGGCTGCTGGCACAG 30272987 Query 264 AGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||| | | ||||||||| ||| || Sbjct 30272988 AGTTAACTGATGCTTATTCCCCAGATA 30273014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828486459521