Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq21676 196 8e-48
seq295 163 4e-38
seq28139 114 2e-23
seq33751 93.3 7e-17
seq763 82.4 1e-13
>seq21676
Length=835
Score = 196 bits (216), Expect = 8e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 398 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 339
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 338 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 279
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 278 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 219
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 218 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 159
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 158 AGTCGACATCG 148
>seq295
Length=1571
Score = 163 bits (180), Expect = 4e-38
Identities = 171/221 (77%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93
|||||| ||| |||| ||| |||||| | | | |||||| | |||||| ||||||
Sbjct 96 TTATCCGCTCCGTACTTGGCTACCCAGCGTTTACCATTGGCATGATAACTGGCACACCAG 155
Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153
|||| |||| ||||| ||||||| ||||| ||| || | |||||| ||| ||| |
Sbjct 156 AGGTGCGTCCTTCCCGATCCTCTCATACTAGGGAAAGGTTCTCTCAG--TTCTATCGCTC 213
Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213
| ||||| |||||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct 214 CCATTGGATATGGACCGAA-TGTCTTACGACGTTCTGAACCCAGCTCACGTATTGCTTTA 272
Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254
||||| |||||| ||||||||||| ||||||| |||| |||
Sbjct 273 ATGGGTGAACAGTCCAACCCTTGGAACCTACTACAGCTCCA 313
>seq28139
Length=110522
Score = 114 bits (126), Expect = 2e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226
||||||||||||| ||| |||||||||||||||| || || |||||||||||||||| |
Sbjct 12931 ACCGAACTGTCTCACGATGTTCTGAACCCAGCTCATGTACCGCTTTAATGGGCGAACATC 12990
Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274
| ||||||||| || |||| || | |||| | || |||||||||||
Sbjct 12991 CGAACCCTTGGAACATACTACAACTACAGGTGGGGAAGAGCCGACATC 13038
>seq33751
Length=2396
Score = 93.3 bits (102), Expect = 7e-17
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||| | |||||| ||| |||| ||| ||||||
Sbjct 161 GGTGGGCTTACTACTTAGATGCTTTCAACAGTTATCCGCTCCGCACTTGGCTACCCAGCG 220
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | |||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 221 TTTACCGTTGGCACGATAACTGGCACACCAGAGGTGTGTCCTTCCCGGTCCTCTCGTACT 280
Query 123 A 123
|
Sbjct 281 A 281
>seq763
Length=1681
Score = 82.4 bits (90), Expect = 1e-13
Identities = 98/132 (74%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 1455 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCA 1396
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | ||||| ||||| |||| ||| ||| ||||||||||||||
Sbjct 1395 TTTACCATTGGCACGATAACTGACACACCAAAGGTGCATCCTTCCTGGTCCTCTCGTACT 1336
Query 123 AAGGACAGCTCC 134
| ||| || |||
Sbjct 1335 AGGGAAAGGTCC 1324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780504618236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |