Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq21676 196 8e-48 seq295 163 4e-38 seq28139 114 2e-23 seq33751 93.3 7e-17 seq763 82.4 1e-13 >seq21676 Length=835 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| | Sbjct 398 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 339 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 338 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 279 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 278 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 219 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 218 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 159 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 158 AGTCGACATCG 148 >seq295 Length=1571 Score = 163 bits (180), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93 |||||| ||| |||| ||| |||||| | | | |||||| | |||||| |||||| Sbjct 96 TTATCCGCTCCGTACTTGGCTACCCAGCGTTTACCATTGGCATGATAACTGGCACACCAG 155 Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153 |||| |||| ||||| ||||||| ||||| ||| || | |||||| ||| ||| | Sbjct 156 AGGTGCGTCCTTCCCGATCCTCTCATACTAGGGAAAGGTTCTCTCAG--TTCTATCGCTC 213 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 | ||||| |||||||| ||||| |||||||||||||||||||| ||| ||||| Sbjct 214 CCATTGGATATGGACCGAA-TGTCTTACGACGTTCTGAACCCAGCTCACGTATTGCTTTA 272 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 ||||| |||||| ||||||||||| ||||||| |||| ||| Sbjct 273 ATGGGTGAACAGTCCAACCCTTGGAACCTACTACAGCTCCA 313 >seq28139 Length=110522 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| ||| |||||||||||||||| || || |||||||||||||||| | Sbjct 12931 ACCGAACTGTCTCACGATGTTCTGAACCCAGCTCATGTACCGCTTTAATGGGCGAACATC 12990 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 | ||||||||| || |||| || | |||| | || ||||||||||| Sbjct 12991 CGAACCCTTGGAACATACTACAACTACAGGTGGGGAAGAGCCGACATC 13038 >seq33751 Length=2396 Score = 93.3 bits (102), Expect = 7e-17 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||| | |||||| ||| |||| ||| |||||| Sbjct 161 GGTGGGCTTACTACTTAGATGCTTTCAACAGTTATCCGCTCCGCACTTGGCTACCCAGCG 220 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | |||||| |||||||||| ||||| |||||||||||||||||| Sbjct 221 TTTACCGTTGGCACGATAACTGGCACACCAGAGGTGTGTCCTTCCCGGTCCTCTCGTACT 280 Query 123 A 123 | Sbjct 281 A 281 >seq763 Length=1681 Score = 82.4 bits (90), Expect = 1e-13 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 1455 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCA 1396 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | ||||| ||||| |||| ||| ||| |||||||||||||| Sbjct 1395 TTTACCATTGGCACGATAACTGACACACCAAAGGTGCATCCTTCCTGGTCCTCTCGTACT 1336 Query 123 AAGGACAGCTCC 134 | ||| || ||| Sbjct 1335 AGGGAAAGGTCC 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780504618236