Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 269 8e-70
seq7 199 1e-48
seq38650 196 1e-47
seq2720 154 4e-35
seq28700 145 2e-32
seq38481 131 5e-28
seq3 86.0 2e-14
seq6 84.2 7e-14
>seq31627
Length=2499
Score = 269 bits (298), Expect = 8e-70
Identities = 258/327 (79%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 2482 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 2423
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 2422 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 2363
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 2362 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 2303
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 2302 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 2243
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 2242 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 2183
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 2182 CT-GGGCGTAAAGGGCACGTAGGCGGT 2157
>seq7
Length=30551617
Score = 199 bits (220), Expect = 1e-48
Identities = 160/193 (83%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||||| ||||| |||||||| |||||||||| | |
Sbjct 26859630 CGCGTCTGATTAGCTAGTTGGTGGGGTAATAGCTTATCAAGGCGATGATCAGTAGCTGGC 26859571
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| | | ||| ||||| || ||| |||||||||||||||||
Sbjct 26859570 CAGAGAGGATGATCAGCCACACTAGGACTAAGACAAGGCCCAGACTCCTACGGGAGGCAG 26859511
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| |||| |||| | ||||| |||||||| | |
Sbjct 26859510 CAGTGGGGAATTTTCCGCAATGGGCGAAAGTCTGACGGAGCAATGCCGCGTGGAGGTAAA 26859451
Query 340 AGGCCTTCGGGTC 352
|||||| ||||||
Sbjct 26859450 AGGCCTACGGGTC 26859438
Score = 89.7 bits (98), Expect = 2e-15
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||| |||||||||||||||||| |||||| ||||||||||||| |||||||||| |
Sbjct 4577180 CGCATCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCG-TGATCAGTAGCTGGT 4577238
Query 220 CTGAGAGGGTGATCGGCCACA 240
| |||||| ||||| ||||||
Sbjct 4577239 CCGAGAGGATGATCAGCCACA 4577259
Score = 75.2 bits (82), Expect = 3e-11
Identities = 100/137 (73%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAG 396
|||||| || ||||| || ||| | || ||||| | ||||| ||| || |||
Sbjct 30273063 AAGGCCGACGAGTCGTGAACTTCTTTTCTGGGAGAAGAAACAATGACAGTATCTGGGGAA 30273004
Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456
|||| | | ||||| ||||||||||||||||||| | ||| || ||||||||||
Sbjct 30273003 TAAGCATCAGTTAACTCTGTGCCAGCAGCCGCGGTAAGATAGAGGATGCAAGCGTTATCC 30272944
Query 457 GGAATTACTGGGGCGTA 473
||||| | | |||||||
Sbjct 30272943 GGAATGA-TTGGGCGTA 30272928
>seq38650
Length=293386
Score = 196 bits (216), Expect = 1e-47
Identities = 211/275 (77%), Gaps = 11/275 (4%)
Strand=Plus/Minus
Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACG---ATCAGTAGCCGA 218
|||||||||||||||||||| |||||| ||||||||||||| | |||||||||
Sbjct 95965 CGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGGTGGTGATCAGTAGCTAG 95906
Query 219 C----CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274
| | || | | ||||| |||||| ||| ||||||||| || ||||||||||| ||||
Sbjct 95905 CTGGTCCGAAACGATGATCAGCCACACTGGGACTGAGACAAGGCCCAAACTCCTAAGGGA 95846
Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334
|||||||||| ||||| || | |||||||| ||||||||| | ||||| ||| ||||
Sbjct 95845 GGCAGCAGTGCGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCACGTGGAG 95786
Query 335 GATGAAGGCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATA--ATGACGGTACTTG 391
| ||||||| |||||| | || || | |||| | ||||| | ||||||||| |
Sbjct 95785 GTAAAAGGCCTACGGGTCATGAACTTCTTTTCCTTGA-GAAGAAACGATGACGGTATCCG 95727
Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426
||| |||| | ||||||| ||||||||||||
Sbjct 95726 CGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCC 95692
>seq2720
Length=641
Score = 154 bits (170), Expect = 4e-35
Identities = 223/310 (72%), Gaps = 6/310 (2%)
Strand=Plus/Plus
Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250
||||||||||| || |||||||| | |||||| ||||| |||||| ||| |||||
Sbjct 279 GCTTACCAAGGAGA---TCAGTAGCTGGTTCGAGAGGATGATCAGCCACACTGGGACTGA 335
Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310
|| | || ||| ||||||| | |||||| |||||| |||| | | |||||||| |||||
Sbjct 336 GATAAGGCCCAGACTCCTATGTGAGGCAACAGTGGAGAATTTCCCGCAATGGGCGAAAGC 395
Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA 370
|||| | ||||| |||| || | ||||||| || ||| | || ||| | | |
Sbjct 396 CTGACGGAGCAATACCGCATGGAAGTAAAAGGCCTACGAGTCATGAACTTCTTTTTTGGA 455
Query 371 GGA-AGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429
| | | | ||||||| || ||| |||| |||||| | |||||||||||| |
Sbjct 456 GAAGAAACAATGACGCTATCCAGGGAATAAGCATCGGCTATATTTGTGCCAGCAGCCACA 515
Query 430 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
|||| | ||| || | |||||||| |||| | | |||| ||||| || |||||||
Sbjct 516 GTAA-GCAAAGGATGCCAACGTTATCCAGAATGA-TTGGGCATAAAGCGTCTATAGGTGG 573
Query 490 TTTCTTAAGT 499
|| ||||||
Sbjct 574 CTTTTTAAGT 583
>seq28700
Length=70328
Score = 145 bits (160), Expect = 2e-32
Identities = 118/143 (83%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||||| |||||||||||||| |||||| | |||||||| || ||||||||| |
Sbjct 34538 CGCGTCTAATTAGCTAGTTGGTGAGGTAATAGTTTACCAAGATGATGATCAGTAGTTGGT 34479
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
||| | ||||| | |||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 34478 GCAAGATGATGATCAGTCACATTGGAACTGAGACACGACCCAGACTCCTACGGGAGGCGG 34419
Query 280 CAGTGGGGAATATTGCACAATGG 302
||||||||||| || ||||||||
Sbjct 34418 CAGTGGGGAATTTTCCACAATGG 34396
>seq38481
Length=269114
Score = 131 bits (144), Expect = 5e-28
Identities = 133/171 (78%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTT-ACCAAGGCGACGATCAGTAGCCGACC 220
||||| |||||||||||||| |||||| | || | |||||||| ||||||||| | |
Sbjct 202465 CGTCTTATTAGCTAGTTGGTGAGGTAATAGTTTAAGCAAGGCGATGATCAGTAGTTGGTC 202406
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| ||||||||| ||||||||| ||| || |||||||| ||| |||
Sbjct 202405 CGAGAGGATGATCAACCACATTGGGACTGAGACAAGGTTCAGACTCCTACTAAAGGTAGC 202346
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
|| ||| || |||||||| |||||||||| ||||| ||| ||||
Sbjct 202345 -TACGGAAATTTTCTGCAATGGGCGAAAGCCTGATAGAGCAATGCCACGTG 202296
>seq3
Length=31061273
Score = 86.0 bits (94), Expect = 2e-14
Identities = 82/104 (79%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
|||| ||||||||||||||| ||| ||||||||| |||||| ||| |||||| ||||
Sbjct 22795117 CGGGGGGCAGCAGTGGGGAACCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCG 22795176
Query 330 TGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAG 371
|||| || ||||| | | | | | |||||||||| || || ||
Sbjct 22795177 TGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCATCGAG 22795220
>seq6
Length=22682783
Score = 84.2 bits (92), Expect = 7e-14
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229
|||||||||||| |||||| ||| ||||||| || |||||||| | || |||||| |
Sbjct 2808257 TAGCTAGTTGGTGAGGTAATAGCTAACCAAGGTGATGATCAGTAACTGATTCGAGAGGAT 2808198
Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270
|||| |||||| || ||||||||| ||| |||||||
Sbjct 2808197 GATCAGCCACACTGAGACTGAGACAAAACCCAGGCTCCTAC 2808157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497015172224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |