Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq31627 269 8e-70 seq7 199 1e-48 seq38650 196 1e-47 seq2720 154 4e-35 seq28700 145 2e-32 seq38481 131 5e-28 seq3 86.0 2e-14 seq6 84.2 7e-14 >seq31627 Length=2499 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 2482 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 2423 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 2422 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 2363 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 2362 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 2303 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 2302 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 2243 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 2242 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 2183 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 2182 CT-GGGCGTAAAGGGCACGTAGGCGGT 2157 >seq7 Length=30551617 Score = 199 bits (220), Expect = 1e-48 Identities = 160/193 (83%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||||| ||||| |||||||| |||||||||| | | Sbjct 26859630 CGCGTCTGATTAGCTAGTTGGTGGGGTAATAGCTTATCAAGGCGATGATCAGTAGCTGGC 26859571 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| | | ||| ||||| || ||| ||||||||||||||||| Sbjct 26859570 CAGAGAGGATGATCAGCCACACTAGGACTAAGACAAGGCCCAGACTCCTACGGGAGGCAG 26859511 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| |||| |||| | ||||| |||||||| | | Sbjct 26859510 CAGTGGGGAATTTTCCGCAATGGGCGAAAGTCTGACGGAGCAATGCCGCGTGGAGGTAAA 26859451 Query 340 AGGCCTTCGGGTC 352 |||||| |||||| Sbjct 26859450 AGGCCTACGGGTC 26859438 Score = 89.7 bits (98), Expect = 2e-15 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| |||||||||||||||||| |||||| ||||||||||||| |||||||||| | Sbjct 4577180 CGCATCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCG-TGATCAGTAGCTGGT 4577238 Query 220 CTGAGAGGGTGATCGGCCACA 240 | |||||| ||||| |||||| Sbjct 4577239 CCGAGAGGATGATCAGCCACA 4577259 Score = 75.2 bits (82), Expect = 3e-11 Identities = 100/137 (73%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAG 396 |||||| || ||||| || ||| | || ||||| | ||||| ||| || ||| Sbjct 30273063 AAGGCCGACGAGTCGTGAACTTCTTTTCTGGGAGAAGAAACAATGACAGTATCTGGGGAA 30273004 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| | | ||||| ||||||||||||||||||| | ||| || |||||||||| Sbjct 30273003 TAAGCATCAGTTAACTCTGTGCCAGCAGCCGCGGTAAGATAGAGGATGCAAGCGTTATCC 30272944 Query 457 GGAATTACTGGGGCGTA 473 ||||| | | ||||||| Sbjct 30272943 GGAATGA-TTGGGCGTA 30272928 >seq38650 Length=293386 Score = 196 bits (216), Expect = 1e-47 Identities = 211/275 (77%), Gaps = 11/275 (4%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACG---ATCAGTAGCCGA 218 |||||||||||||||||||| |||||| ||||||||||||| | ||||||||| Sbjct 95965 CGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGGTGGTGATCAGTAGCTAG 95906 Query 219 C----CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 | | || | | ||||| |||||| ||| ||||||||| || ||||||||||| |||| Sbjct 95905 CTGGTCCGAAACGATGATCAGCCACACTGGGACTGAGACAAGGCCCAAACTCCTAAGGGA 95846 Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 |||||||||| ||||| || | |||||||| ||||||||| | ||||| ||| |||| Sbjct 95845 GGCAGCAGTGCGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCACGTGGAG 95786 Query 335 GATGAAGGCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATA--ATGACGGTACTTG 391 | ||||||| |||||| | || || | |||| | ||||| | ||||||||| | Sbjct 95785 GTAAAAGGCCTACGGGTCATGAACTTCTTTTCCTTGA-GAAGAAACGATGACGGTATCCG 95727 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426 ||| |||| | ||||||| |||||||||||| Sbjct 95726 CGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCC 95692 >seq2720 Length=641 Score = 154 bits (170), Expect = 4e-35 Identities = 223/310 (72%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250 ||||||||||| || |||||||| | |||||| ||||| |||||| ||| ||||| Sbjct 279 GCTTACCAAGGAGA---TCAGTAGCTGGTTCGAGAGGATGATCAGCCACACTGGGACTGA 335 Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 || | || ||| ||||||| | |||||| |||||| |||| | | |||||||| ||||| Sbjct 336 GATAAGGCCCAGACTCCTATGTGAGGCAACAGTGGAGAATTTCCCGCAATGGGCGAAAGC 395 Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA 370 |||| | ||||| |||| || | ||||||| || ||| | || ||| | | | Sbjct 396 CTGACGGAGCAATACCGCATGGAAGTAAAAGGCCTACGAGTCATGAACTTCTTTTTTGGA 455 Query 371 GGA-AGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 | | | | ||||||| || ||| |||| |||||| | |||||||||||| | Sbjct 456 GAAGAAACAATGACGCTATCCAGGGAATAAGCATCGGCTATATTTGTGCCAGCAGCCACA 515 Query 430 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| | ||| || | |||||||| |||| | | |||| ||||| || ||||||| Sbjct 516 GTAA-GCAAAGGATGCCAACGTTATCCAGAATGA-TTGGGCATAAAGCGTCTATAGGTGG 573 Query 490 TTTCTTAAGT 499 || |||||| Sbjct 574 CTTTTTAAGT 583 >seq28700 Length=70328 Score = 145 bits (160), Expect = 2e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||| |||||||||||||| |||||| | |||||||| || ||||||||| | Sbjct 34538 CGCGTCTAATTAGCTAGTTGGTGAGGTAATAGTTTACCAAGATGATGATCAGTAGTTGGT 34479 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| | ||||| | |||||||||||||||||||| ||| ||||||||||||||| | Sbjct 34478 GCAAGATGATGATCAGTCACATTGGAACTGAGACACGACCCAGACTCCTACGGGAGGCGG 34419 Query 280 CAGTGGGGAATATTGCACAATGG 302 ||||||||||| || |||||||| Sbjct 34418 CAGTGGGGAATTTTCCACAATGG 34396 >seq38481 Length=269114 Score = 131 bits (144), Expect = 5e-28 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTT-ACCAAGGCGACGATCAGTAGCCGACC 220 ||||| |||||||||||||| |||||| | || | |||||||| ||||||||| | | Sbjct 202465 CGTCTTATTAGCTAGTTGGTGAGGTAATAGTTTAAGCAAGGCGATGATCAGTAGTTGGTC 202406 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| ||||||||| ||||||||| ||| || |||||||| ||| ||| Sbjct 202405 CGAGAGGATGATCAACCACATTGGGACTGAGACAAGGTTCAGACTCCTACTAAAGGTAGC 202346 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || ||| || |||||||| |||||||||| ||||| ||| |||| Sbjct 202345 -TACGGAAATTTTCTGCAATGGGCGAAAGCCTGATAGAGCAATGCCACGTG 202296 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 |||| ||||||||||||||| ||| ||||||||| |||||| ||| |||||| |||| Sbjct 22795117 CGGGGGGCAGCAGTGGGGAACCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCG 22795176 Query 330 TGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAG 371 |||| || ||||| | | | | | |||||||||| || || || Sbjct 22795177 TGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCATCGAG 22795220 >seq6 Length=22682783 Score = 84.2 bits (92), Expect = 7e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229 |||||||||||| |||||| ||| ||||||| || |||||||| | || |||||| | Sbjct 2808257 TAGCTAGTTGGTGAGGTAATAGCTAACCAAGGTGATGATCAGTAACTGATTCGAGAGGAT 2808198 Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270 |||| |||||| || ||||||||| ||| ||||||| Sbjct 2808197 GATCAGCCACACTGAGACTGAGACAAAACCCAGGCTCCTAC 2808157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497015172224