Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq31627 212 2e-52 seq38496 138 3e-30 seq6 107 5e-21 seq2 93.3 1e-16 >seq31627 Length=2499 Score = 212 bits (234), Expect = 2e-52 Identities = 253/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 2259 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 2200 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | || Sbjct 2199 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTT 2140 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 2139 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 2086 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 2085 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAA 2026 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 2025 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 1966 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 1965 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 1926 >seq38496 Length=246243 Score = 138 bits (152), Expect = 3e-30 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||||| |||||| | ||| |||| ||||||||||||| || | ||||||||| Sbjct 3893 AGGGGCAGAGGGAATTTCCGGTGGAGCGTTGAAATGCGTAGAGATCGGAAGGAACACCCA 3834 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||| || |||||| | | |||||||||||| ||||||| |||||||||| Sbjct 3833 AGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAA 3774 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-- 355 |||||||| |||| |||||||| || ||||||||| |||||| ||| | | ||| Sbjct 3773 TGGGATTAGAGACCCCGGTAGTCCTAGCTATAAACGATGGATACTAAGTGGCTGTGCGTA 3714 Query 356 --CATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| | ||| | ||| || || ||||||| || ||| ||||||| Sbjct 3713 CCCACCCGTG---CAATGCTGTAGCTAATGCGTTAAGTATCCCGCCTAGGGAGTA 3662 >seq6 Length=22682783 Score = 107 bits (118), Expect = 5e-21 Identities = 173/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Plus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 |||||||| | |||||| |||||| | || |||| ||||||||||||| || Sbjct 17304328 GCTAGAGTATGGTAGGGGCTGAGGGAATTTCCGGTAGAGCGATGAAATGCGTAGAGATCG 17304387 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | ||||||||| |||||| || || ||| | | |||||||| ||||| Sbjct 17304388 GAAGGAACACCCACGGCGAAAGCACTCTGTTGGGCCG------ACACTGAGAGATGAAAG 17304441 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 | |||||||||| |||||| | ||||| ||||||| ||||||||||||| ||| || Sbjct 17304442 CTAGGGGAGCAAATTGGATTACAAACCCTAGTAGTCCTAGCCGTAAACGATGGATATTAC 17304501 Query 345 GTGTCGGGGCGCATAAGTGCTCCGGTGC-----CGCAGCAAACGCAATAAGTATTCCACC 399 ||| | ||| | | | || |||| | ||| ||| | ||||||| || || Sbjct 17304502 GTGGTTGTGCGTA----TCCACCCGTGCAATGTTGTAGCTAACACGTTAAGTATCCCGCC 17304557 Query 400 TGGGGAGTA 408 ||||||||| Sbjct 17304558 TGGGGAGTA 17304566 >seq2 Length=32560536 Score = 93.3 bits (102), Expect = 1e-16 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | |||||||| | | ||||||| |||||| | ||| |||| ||||||| Sbjct 5529895 GAAACTACCAAGCTAGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGATGAAATG 5529836 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 |||||| || | ||||||||| |||||| || |||||| | |||||||||| Sbjct 5529835 CGTAGAGATCGGAAGGAACACCCAAGGCGAAAGCACTCTGCTGGGGCGACACTGACACTG 5529776 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || |||||| |||||||||| ||||| |||| Sbjct 5529775 AGAGACGAAAGGTAGGGGAGCAAATGGGATT-GATA 5529741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202730138368