Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 185 2e-44 seq20800 156 8e-36 seq7 118 2e-24 seq3 100 5e-19 seq5 91.5 3e-16 >seq1 Length=28142018 Score = 185 bits (204), Expect = 2e-44 Identities = 181/231 (78%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 1426555 GGAAGTTTGAGGCAATAACAAGTTTGTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGC 1426496 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 ||||||| | |||||||| | ||||||| ||| | || ||||||| | || Sbjct 1426495 AACACTGATGTATTCAACGAGT--CTAGCCTTGGCTTACAGGCCCGGCTAATCTT-TGAA 1426439 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | || || |||| ||||| ||||||| || ||| ||||||| ||||||| |||| | Sbjct 1426438 ATTTCATCATGATGGGAATAGATCATTGCAGTTGTTGATCTTCAATGAGGAATTCCTAAT 1426379 Query 283 AAGCGCGTGTCATCAGCA-----CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | |||||||||| ||| |||| ||| | | |||||||| || Sbjct 1426378 AAGCGTGAGTCATCAGCATGACTCGCATTGACTACTTTCATGCCCTTTATA 1426328 Score = 109 bits (120), Expect = 1e-21 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| Sbjct 12274323 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTTGGCTGCACGTGCGCTA 12274264 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 | |||| | |||||||| || ||||||| Sbjct 12274263 CGCTGATGTATTCAACGAGTCTATAGCCTTGGC 12274231 >seq20800 Length=619 Score = 156 bits (172), Expect = 8e-36 Identities = 118/138 (86%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 14 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTA 72 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 73 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 132 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||| ||||||||| Sbjct 133 ACGTCCCTTCCCTTTGTA 150 >seq7 Length=30551617 Score = 118 bits (130), Expect = 2e-24 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 || ||||||||| | ||||||| || |||| | || ||||| | |||||||| Sbjct 23272288 GCACTACACTGATGTATTTAACGAGTCTATAGCCTTCACTGGCAGGTCCGAGTAATCTT- 23272230 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 | ||| | ||||| |||||||| | ||||| ||||||| |||||||||| ||| || Sbjct 23272229 TGAAATTTCATCGTGATGGGGATAAATCATTGTGATTATTGGTCTTCAACGAAGAACTCC 23272170 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| || || || ||| ||||| || || |||| ||||||||||| Sbjct 23272169 TAGTAAGCACGAGTTATTAGCTCGCGTCGACTATGTCCATGCCCTTTGTA 23272120 >seq3 Length=31061273 Score = 100 bits (110), Expect = 5e-19 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| | |||||| | Sbjct 27041592 CAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACT 27041533 Query 311 ACGTCCCTGCCCTTTGTA 328 || ||||||||||||||| Sbjct 27041532 ACATCCCTGCCCTTTGTA 27041515 >seq5 Length=15272566 Score = 91.5 bits (100), Expect = 3e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| |||||||||||| | ||||||| | |||||| | Sbjct 7962168 CAATTGTTGGTCTTCAACGAGGAATTTCTAGTAAGCGCGAGCCATCAGCTCTCGTTGACT 7962109 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||| || Sbjct 7962108 ATGTCCCTGCCCTTTCTA 7962091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946830108928