Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1 185 2e-44
seq20800 156 8e-36
seq7 118 2e-24
seq3 100 5e-19
seq5 91.5 3e-16
>seq1
Length=28142018
Score = 185 bits (204), Expect = 2e-44
Identities = 181/231 (78%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162
|||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1426555 GGAAGTTTGAGGCAATAACAAGTTTGTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGC 1426496
Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222
||||||| | |||||||| | ||||||| ||| | || ||||||| | ||
Sbjct 1426495 AACACTGATGTATTCAACGAGT--CTAGCCTTGGCTTACAGGCCCGGCTAATCTT-TGAA 1426439
Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282
| | || || |||| ||||| ||||||| || ||| ||||||| ||||||| |||| |
Sbjct 1426438 ATTTCATCATGATGGGAATAGATCATTGCAGTTGTTGATCTTCAATGAGGAATTCCTAAT 1426379
Query 283 AAGCGCGTGTCATCAGCA-----CGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| | |||||||||| ||| |||| ||| | | |||||||| ||
Sbjct 1426378 AAGCGTGAGTCATCAGCATGACTCGCATTGACTACTTTCATGCCCTTTATA 1426328
Score = 109 bits (120), Expect = 1e-21
Identities = 80/93 (86%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 12274323 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTTGGCTGCACGTGCGCTA 12274264
Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGC 197
| |||| | |||||||| || |||||||
Sbjct 12274263 CGCTGATGTATTCAACGAGTCTATAGCCTTGGC 12274231
>seq20800
Length=619
Score = 156 bits (172), Expect = 8e-36
Identities = 118/138 (86%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||
Sbjct 14 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTA 72
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |
Sbjct 73 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 132
Query 311 ACGTCCCTGCCCTTTGTA 328
|||||||| |||||||||
Sbjct 133 ACGTCCCTTCCCTTTGTA 150
>seq7
Length=30551617
Score = 118 bits (130), Expect = 2e-24
Identities = 129/170 (76%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218
|| ||||||||| | ||||||| || |||| | || ||||| | ||||||||
Sbjct 23272288 GCACTACACTGATGTATTTAACGAGTCTATAGCCTTCACTGGCAGGTCCGAGTAATCTT- 23272230
Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278
| ||| | ||||| |||||||| | ||||| ||||||| |||||||||| ||| ||
Sbjct 23272229 TGAAATTTCATCGTGATGGGGATAAATCATTGTGATTATTGGTCTTCAACGAAGAACTCC 23272170
Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||||||| || || || ||| ||||| || || |||| |||||||||||
Sbjct 23272169 TAGTAAGCACGAGTTATTAGCTCGCGTCGACTATGTCCATGCCCTTTGTA 23272120
>seq3
Length=31061273
Score = 100 bits (110), Expect = 5e-19
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| | |||||| |
Sbjct 27041592 CAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACT 27041533
Query 311 ACGTCCCTGCCCTTTGTA 328
|| |||||||||||||||
Sbjct 27041532 ACATCCCTGCCCTTTGTA 27041515
>seq5
Length=15272566
Score = 91.5 bits (100), Expect = 3e-16
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||| |||||||||||| | ||||||| | |||||| |
Sbjct 7962168 CAATTGTTGGTCTTCAACGAGGAATTTCTAGTAAGCGCGAGCCATCAGCTCTCGTTGACT 7962109
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||| ||
Sbjct 7962108 ATGTCCCTGCCCTTTCTA 7962091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946830108928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |