Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 5e-16 seq1 86.0 2e-14 >seq2 Length=32560536 Score = 91.5 bits (100), Expect = 5e-16 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| |||||| ||||| |||| ||||| | || ||| | ||| |||| Sbjct 27237038 GACCCGAAACCGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAATAGGCCTTGGA 27237097 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| |||| || ||||||||||| Sbjct 27237098 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGACTAAGGGTGAAAGGCA 27237157 Query 154 AA 155 || Sbjct 27237158 AA 27237159 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 2e-14 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACC-CATGGCCAGGATGAAGGTGCGGT 80 |||| || | | || ||||| | |||||||| |||| ||||||||| | | ||| Sbjct 13347572 GTCGGTGCTTATGGATCCGAATCTGGGTGATCTAATTCATGACCAGGATGA-GCTTAGGT 13347630 Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 | | |||||||||||||| ||| || |||||||| || |||||| ||||| || Sbjct 13347631 GAAATTAAGTGGAGGTCCGAACCAACTGATATTGAAAAACCAGCCGATGAGTTGTGGTTA 13347690 Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186 | ||||||| || | | ||| | || |||||||||||| || || Sbjct 13347691 GCGGTGAAATGCCACTCGAACCTAGAGCTAGCTGGTTCTCCCCAAA 13347736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688940194304