Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 5e-16
seq1 86.0 2e-14
>seq2
Length=32560536
Score = 91.5 bits (100), Expect = 5e-16
Identities = 94/122 (77%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| |||||| ||||| |||| ||||| | || ||| | ||| ||||
Sbjct 27237038 GACCCGAAACCGGTCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAATAGGCCTTGGA 27237097
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| |||| || |||||||||||
Sbjct 27237098 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGACTAAGGGTGAAAGGCA 27237157
Query 154 AA 155
||
Sbjct 27237158 AA 27237159
>seq1
Length=28142018
Score = 86.0 bits (94), Expect = 2e-14
Identities = 120/166 (72%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACC-CATGGCCAGGATGAAGGTGCGGT 80
|||| || | | || ||||| | |||||||| |||| ||||||||| | | |||
Sbjct 13347572 GTCGGTGCTTATGGATCCGAATCTGGGTGATCTAATTCATGACCAGGATGA-GCTTAGGT 13347630
Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140
| | |||||||||||||| ||| || |||||||| || |||||| ||||| ||
Sbjct 13347631 GAAATTAAGTGGAGGTCCGAACCAACTGATATTGAAAAACCAGCCGATGAGTTGTGGTTA 13347690
Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186
| ||||||| || | | ||| | || |||||||||||| || ||
Sbjct 13347691 GCGGTGAAATGCCACTCGAACCTAGAGCTAGCTGGTTCTCCCCAAA 13347736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1688940194304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |