Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq20907 150 3e-34 seq9814 77.0 6e-12 seq3 77.0 6e-12 >seq20907 Length=607 Score = 150 bits (166), Expect = 3e-34 Identities = 176/235 (75%), Gaps = 17/235 (7%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||||||||| | || ||||||||||||||||| ||| ||||||||||| || Sbjct 51 ATGGTGGATGCCTTGACTGGTAAAGGCGATGAAGGACGTACTAGACTGCGATAAGCTACG 110 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | || | |||||||||| |||||||||||||||| |||| Sbjct 111 GGGAG-CTGTCAAGAAGCTTTGATCCGTAGATTTCCGAATGGGGCAACC----------- 158 Query 128 GTCATTGCATGCTGA-ATACA-TAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCT 184 || || || || ||||| || ||| | |||||||| || ||| |||||||||| Sbjct 159 --CAATGTATAGAGATATACATTACCTATATAGGAGCGAACGAGGGGAATTGAAACATCT 216 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||| | |||||||||||||||| |||||| | ||||| ||||||||||| Sbjct 217 TAGTACCCTCAGGAAAAGAAATCAATAGAGATTGCGTCAGTAGCGGCGAGCGAAA 271 >seq9814 Length=918 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 215 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 274 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 275 GGCGAGCGAGAGCGGAT 291 >seq3 Length=31061273 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||||| |||||||| |||||| ||||||||||| ||| | | ||||| ||||| Sbjct 549106 GGCGAACTAAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGTGGTTCCCGTAGTAG 549047 Query 228 TGGCGAGCGAAATGGGA 244 |||||| ||||||||| Sbjct 549046 CGGCGAGTGAAATGGGA 549030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918041355616