Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5 266 1e-68 seq38941 172 2e-40 seq38476 168 2e-39 seq28956 136 1e-29 seq6 136 1e-29 seq2986 105 2e-20 seq38656 87.8 6e-15 seq28649 86.0 2e-14 seq7 84.2 7e-14 seq20748 78.8 3e-12 >seq5 Length=15272566 Score = 266 bits (294), Expect = 1e-68 Identities = 258/323 (80%), Gaps = 13/323 (4%) Strand=Plus/Minus Query 79 TGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAG 137 ||||||| |||||||||||||||||| |||||||| || || |||| | || | |||| Sbjct 1077195 TGCCGCCACAGCCAAACTCCCCACCTAACAATGTCTTCCGCCTGGATTGACCAACCGAAG 1077136 Query 138 --GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaa 194 || |||| ||| ||| | |||| | | || ||| |||| || ||||||| Sbjct 1077135 TCGATCTTAGGTCCAAAAAGAGGGTCAGCGCC--CCGCCCCCGATTCACGGAATAAGTAA 1077078 Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCACTTATTCTACA 253 || || | ||| |||||| |||||||||| | | | ||||||||||| ||||| Sbjct 1077077 AATAA-GTTAAAAGTAGTGATATTTCACTTTTGTTGTTTCCATCTCCCACTTATCCTACA 1077019 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1077018 CCTCT---GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGTCTTCTCTCCCC 1076962 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||||||| ||| |||||||||||| |||| ||||| || ||||||||| |||||||| Sbjct 1076961 GCTGATTCCGTCAATCCCGTTCCCTTGACTGTTGTTTCACTGGATAGTAGACAGGGACAG 1076902 Query 374 TGGGAATCTCGTTAATCCATTCA 396 |||||| ||||||||||||||| Sbjct 1076901 TGGGAA--TCGTTAATCCATTCA 1076881 >seq38941 Length=8647 Score = 172 bits (190), Expect = 2e-40 Identities = 128/150 (85%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 |||||||||||| ||||||| ||||| |||| ||| |||| ||| | || |||||||| Sbjct 7731 TTTCACAAAGTCAGACTAGAATCAAGTTCAATAGGATCTTTTTTTCTCGGTGATTCCGTT 7672 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 ||||| ||| |||| ||||||||||| | ||||||||| | ||||||||| |||||||| Sbjct 7671 AAGCCTGTTTTCTTGACTGTGGTTTCGTTGGATAGTAGACACGGACAGTGGAAATCTCGT 7612 Query 386 TAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| ||| |||||||||||||||||||| Sbjct 7611 TAATCAATTAATGCGCGTCACTAATTAGAT 7582 >seq38476 Length=283411 Score = 168 bits (186), Expect = 2e-39 Identities = 128/150 (85%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 |||||||||||| |||||| ||||| |||||| |||||| ||| | | |||||||| | Sbjct 52681 TTTCACAAAGTCATACTAGAATCAAGTTCAACATGGTCTTTTTTTCAGG-TGATTCCGTC 52623 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 ||||||||| |||| |||| ||||||| ||||||||| | |||||||||||||||||| Sbjct 52622 AAGCCCGTTTTCTTGATTGTGATTTCGCTGGATAGTAGACATGGACAGTGGGAATCTCGT 52563 Query 386 TAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| ||||||| ||||||||||||||| Sbjct 52562 TAATCAATTCATGTACGTCACTAATTAGAT 52533 >seq28956 Length=14041 Score = 136 bits (150), Expect = 1e-29 Identities = 103/120 (86%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAG-TCCCCCTTAGGACACCTGCGTTAT 65 |||||| || ||| ||||||| ||||||| |||| || | ||| |||||||||||||| Sbjct 127 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCATTAAGACACCTGCGTTAT 68 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 |||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct 67 CTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCTCGGAT 8 >seq6 Length=22682783 Score = 136 bits (150), Expect = 1e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || | | ||||||||||||||| |||| | |||||||||||| |||||| Sbjct 1600929 CTTTTGTTCCATACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 1600870 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||| |||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 1600869 TTTTAACAGATATGCCGCCCCAACCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATT 1600810 Query 127 GGCCCGCGAA 136 | || || || Sbjct 1600809 GACCAGCCAA 1600800 >seq2986 Length=1514 Score = 105 bits (116), Expect = 2e-20 Identities = 86/104 (83%), Gaps = 8/104 (8%) Strand=Plus/Minus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC----CGAAAC 234 |||| || ||||||||| |||| ||| ||||||||||||||||| ||| | || Sbjct 520 TTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCAATTCTAA-- 463 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 462 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCATAAAGTCG 421 >seq38656 Length=159080 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||||| ||| |||| ||||||||||||||||| | |||| | ||| || ||||||||| Sbjct 59767 TTTGGATAC-TTAAATGAGTCATAGTTACTCCCATCATTTATCGGCGTTTAGTTGAATTT 59825 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||| ||||| | ||||| | |||||| | ||| |||||| || Sbjct 59826 TTTCACTTTAACATT-AAAGCACATGTTAGAAATAATATTACGTCAATAT 59874 >seq28649 Length=80988 Score = 86.0 bits (94), Expect = 2e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GC 237 |||| || ||||||||| ||| ||| ||| ||||||||| || || | | || Sbjct 27045 TTCACAGAATAAGTAAAATAACATTAAAAGTAATGGTATTTCGTTTTTGCTGTTTCCAGC 27104 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 ||||| |||| ||||||||||| |||||||||| |||||| |||||||| Sbjct 27105 TCCCATTTATCCTACACCTCTCTAGTCATTTCATAAAGTCTGACTAGAG 27153 >seq7 Length=30551617 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 193 aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCCACTTATTCTA 251 |||| || | ||| |||||||||||||| || || | || ||||||| |||| ||| Sbjct 23273426 AAAATAATGTTAAAAGTAGTGGTATTTCATTTTCGTTGTTTCGAGCTCCCATTTATCCTA 23273485 Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 || || ||||||||| || |||||||||||||||||| Sbjct 23273486 CATCTTTCAAGTCATGACATAAAGTCGGACTAGAGTCA 23273523 >seq20748 Length=620 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 418 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 359 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 358 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634561438048