Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq5 266 1e-68
seq38941 172 2e-40
seq38476 168 2e-39
seq28956 136 1e-29
seq6 136 1e-29
seq2986 105 2e-20
seq38656 87.8 6e-15
seq28649 86.0 2e-14
seq7 84.2 7e-14
seq20748 78.8 3e-12
>seq5
Length=15272566
Score = 266 bits (294), Expect = 1e-68
Identities = 258/323 (80%), Gaps = 13/323 (4%)
Strand=Plus/Minus
Query 79 TGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAG 137
||||||| |||||||||||||||||| |||||||| || || |||| | || | ||||
Sbjct 1077195 TGCCGCCACAGCCAAACTCCCCACCTAACAATGTCTTCCGCCTGGATTGACCAACCGAAG 1077136
Query 138 --GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaa 194
|| |||| ||| ||| | |||| | | || ||| |||| || |||||||
Sbjct 1077135 TCGATCTTAGGTCCAAAAAGAGGGTCAGCGCC--CCGCCCCCGATTCACGGAATAAGTAA 1077078
Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCACTTATTCTACA 253
|| || | ||| |||||| |||||||||| | | | ||||||||||| |||||
Sbjct 1077077 AATAA-GTTAAAAGTAGTGATATTTCACTTTTGTTGTTTCCATCTCCCACTTATCCTACA 1077019
Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313
||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1077018 CCTCT---GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGTCTTCTCTCCCC 1076962
Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373
|||||||||| ||| |||||||||||| |||| ||||| || ||||||||| ||||||||
Sbjct 1076961 GCTGATTCCGTCAATCCCGTTCCCTTGACTGTTGTTTCACTGGATAGTAGACAGGGACAG 1076902
Query 374 TGGGAATCTCGTTAATCCATTCA 396
|||||| |||||||||||||||
Sbjct 1076901 TGGGAA--TCGTTAATCCATTCA 1076881
>seq38941
Length=8647
Score = 172 bits (190), Expect = 2e-40
Identities = 128/150 (85%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325
|||||||||||| ||||||| ||||| |||| ||| |||| ||| | || ||||||||
Sbjct 7731 TTTCACAAAGTCAGACTAGAATCAAGTTCAATAGGATCTTTTTTTCTCGGTGATTCCGTT 7672
Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385
||||| ||| |||| ||||||||||| | ||||||||| | ||||||||| ||||||||
Sbjct 7671 AAGCCTGTTTTCTTGACTGTGGTTTCGTTGGATAGTAGACACGGACAGTGGAAATCTCGT 7612
Query 386 TAATCCATTCATGCGCGTCACTAATTAGAT 415
||||| ||| ||||||||||||||||||||
Sbjct 7611 TAATCAATTAATGCGCGTCACTAATTAGAT 7582
>seq38476
Length=283411
Score = 168 bits (186), Expect = 2e-39
Identities = 128/150 (85%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325
|||||||||||| |||||| ||||| |||||| |||||| ||| | | |||||||| |
Sbjct 52681 TTTCACAAAGTCATACTAGAATCAAGTTCAACATGGTCTTTTTTTCAGG-TGATTCCGTC 52623
Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385
||||||||| |||| |||| ||||||| ||||||||| | ||||||||||||||||||
Sbjct 52622 AAGCCCGTTTTCTTGATTGTGATTTCGCTGGATAGTAGACATGGACAGTGGGAATCTCGT 52563
Query 386 TAATCCATTCATGCGCGTCACTAATTAGAT 415
||||| ||||||| |||||||||||||||
Sbjct 52562 TAATCAATTCATGTACGTCACTAATTAGAT 52533
>seq28956
Length=14041
Score = 136 bits (150), Expect = 1e-29
Identities = 103/120 (86%), Gaps = 1/120 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAG-TCCCCCTTAGGACACCTGCGTTAT 65
|||||| || ||| ||||||| ||||||| |||| || | ||| ||||||||||||||
Sbjct 127 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCATTAAGACACCTGCGTTAT 68
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125
|||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 67 CTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCTCGGAT 8
>seq6
Length=22682783
Score = 136 bits (150), Expect = 1e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || | | ||||||||||||||| |||| | |||||||||||| ||||||
Sbjct 1600929 CTTTTGTTCCATACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 1600870
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||| |||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 1600869 TTTTAACAGATATGCCGCCCCAACCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATT 1600810
Query 127 GGCCCGCGAA 136
| || || ||
Sbjct 1600809 GACCAGCCAA 1600800
>seq2986
Length=1514
Score = 105 bits (116), Expect = 2e-20
Identities = 86/104 (83%), Gaps = 8/104 (8%)
Strand=Plus/Minus
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC----CGAAAC 234
|||| || ||||||||| |||| ||| ||||||||||||||||| ||| | ||
Sbjct 520 TTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCAATTCTAA-- 463
Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCATAAAGTCG 421
>seq38656
Length=159080
Score = 87.8 bits (96), Expect = 6e-15
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484
||||| ||| |||| ||||||||||||||||| | |||| | ||| || |||||||||
Sbjct 59767 TTTGGATAC-TTAAATGAGTCATAGTTACTCCCATCATTTATCGGCGTTTAGTTGAATTT 59825
Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
|||||||| ||||| | ||||| | |||||| | ||| |||||| ||
Sbjct 59826 TTTCACTTTAACATT-AAAGCACATGTTAGAAATAATATTACGTCAATAT 59874
>seq28649
Length=80988
Score = 86.0 bits (94), Expect = 2e-14
Identities = 85/109 (78%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GC 237
|||| || ||||||||| ||| ||| ||| ||||||||| || || | | ||
Sbjct 27045 TTCACAGAATAAGTAAAATAACATTAAAAGTAATGGTATTTCGTTTTTGCTGTTTCCAGC 27104
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286
||||| |||| ||||||||||| |||||||||| |||||| ||||||||
Sbjct 27105 TCCCATTTATCCTACACCTCTCTAGTCATTTCATAAAGTCTGACTAGAG 27153
>seq7
Length=30551617
Score = 84.2 bits (92), Expect = 7e-14
Identities = 78/98 (80%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 193 aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCCACTTATTCTA 251
|||| || | ||| |||||||||||||| || || | || ||||||| |||| |||
Sbjct 23273426 AAAATAATGTTAAAAGTAGTGGTATTTCATTTTCGTTGTTTCGAGCTCCCATTTATCCTA 23273485
Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289
|| || ||||||||| || ||||||||||||||||||
Sbjct 23273486 CATCTTTCAAGTCATGACATAAAGTCGGACTAGAGTCA 23273523
>seq20748
Length=620
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 418 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 359
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 358 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634561438048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |