Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq31627 114 3e-23 seq7 96.9 7e-18 seq38650 93.3 9e-17 seq28700 80.6 6e-13 >seq31627 Length=2499 Score = 114 bits (126), Expect = 3e-23 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 2308 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 2367 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 2368 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 2427 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 2428 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 2487 Query 285 GCATCCCCATC 295 ||| | |||| Sbjct 2488 GCAGGCTCATC 2498 >seq7 Length=30551617 Score = 96.9 bits (106), Expect = 7e-18 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 97 CCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAAT 156 |||||| | || | ||| ||||| | | ||| ||||||| ||| |||||| || Sbjct 26859441 CCGTAGGCCTTTTA-CCTCCACGCGGCATTGCTCCGTCAGACTTTCGCCCATTGCGGAAA 26859499 Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGAC 216 ||||| |||||||||||||||||||||| ||| || ||||| ||| | | ||||| || Sbjct 26859500 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCTTGTCTTAGTCCTAGTGTGGCTGAT 26859559 Query 217 CTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276 | ||||||| | | ||| ||| | | || | | || ||||||| || |||| || Sbjct 26859560 CATCCTCTCTGGCCAGCTACTGATCATCGCCTTGATAAGCTATTACCCCACCAACTAGCT 26859619 Query 277 AAT 279 ||| Sbjct 26859620 AAT 26859622 >seq38650 Length=293386 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| | || | ||| |||| | | ||| |||| || Sbjct 95755 AAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGTGGCATTGCTCCGTCAGGCTT 95813 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 95814 TCGCCCATTGCGGAAAATTCCGCACTGCTGCCTCCCTTAGGAGTTTGGGCCTTGTCTCAG 95873 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 95874 TCCCAGTGTGG 95884 >seq28700 Length=70328 Score = 80.6 bits (88), Expect = 6e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 ||||||| || ||||| |||||| ||||||||||||||| ||| ||||||||||||| Sbjct 34395 TCCATTGTGGAAAATTCCCCACTGCCGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTTC 34454 Query 204 CAATGTG 210 ||||||| Sbjct 34455 CAATGTG 34461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068382622912