Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq31627 114 3e-23
seq7 96.9 7e-18
seq38650 93.3 9e-17
seq28700 80.6 6e-13
>seq31627
Length=2499
Score = 114 bits (126), Expect = 3e-23
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 2308 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 2367
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 2368 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 2427
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 2428 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 2487
Query 285 GCATCCCCATC 295
||| | ||||
Sbjct 2488 GCAGGCTCATC 2498
>seq7
Length=30551617
Score = 96.9 bits (106), Expect = 7e-18
Identities = 132/183 (72%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 97 CCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAAT 156
|||||| | || | ||| ||||| | | ||| ||||||| ||| |||||| ||
Sbjct 26859441 CCGTAGGCCTTTTA-CCTCCACGCGGCATTGCTCCGTCAGACTTTCGCCCATTGCGGAAA 26859499
Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGAC 216
||||| |||||||||||||||||||||| ||| || ||||| ||| | | ||||| ||
Sbjct 26859500 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCTTGTCTTAGTCCTAGTGTGGCTGAT 26859559
Query 217 CTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276
| ||||||| | | ||| ||| | | || | | || ||||||| || |||| ||
Sbjct 26859560 CATCCTCTCTGGCCAGCTACTGATCATCGCCTTGATAAGCTATTACCCCACCAACTAGCT 26859619
Query 277 AAT 279
|||
Sbjct 26859620 AAT 26859622
>seq38650
Length=293386
Score = 93.3 bits (102), Expect = 9e-17
Identities = 100/131 (76%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||||| | || | ||| |||| | | ||| |||| ||
Sbjct 95755 AAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGTGGCATTGCTCCGTCAGGCTT 95813
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 95814 TCGCCCATTGCGGAAAATTCCGCACTGCTGCCTCCCTTAGGAGTTTGGGCCTTGTCTCAG 95873
Query 201 TTCCAATGTGG 211
| ||| |||||
Sbjct 95874 TCCCAGTGTGG 95884
>seq28700
Length=70328
Score = 80.6 bits (88), Expect = 6e-13
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203
||||||| || ||||| |||||| ||||||||||||||| ||| |||||||||||||
Sbjct 34395 TCCATTGTGGAAAATTCCCCACTGCCGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTTC 34454
Query 204 CAATGTG 210
|||||||
Sbjct 34455 CAATGTG 34461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068382622912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |