Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq28157 248 3e-63 seq33892 237 5e-60 seq29870 147 7e-33 seq7 96.9 1e-17 seq6 86.0 2e-14 >seq28157 Length=106540 Score = 248 bits (274), Expect = 3e-63 Identities = 181/209 (87%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 7333 GATTGGGTAATTTGCACGTCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTTTCAGGCTCC 7274 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 || | ||||||||||||||||||| ||| |||||| |||||||||||||||||||| Sbjct 7273 CTATTCGGAATCGAACCCTAATTCTTCGTCACCCGTCACCACCATGGTAGGCCACTATCC 7214 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG-CCATG 250 ||||||| |||||||||||||||||||||||||||| | || || | ||||| || || Sbjct 7213 TACCATCAAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCAACACAAGGACCGTG 7154 Query 251 CGATTCGTTAAGTTATTATGAATCACCAA 279 |||| || |||||| |||||||| ||| Sbjct 7153 CGATCCGACGAGTTATCATGAATCATCAA 7125 >seq33892 Length=2099 Score = 237 bits (262), Expect = 5e-60 Identities = 146/156 (94%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 162 GATTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAAGCTCC 103 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| Sbjct 102 CTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCC 43 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||||| |||||||||||||| ||||||||||||| Sbjct 42 TACCATCAAAAGTTGATAGGGCCGAAATTTGAATGA 7 >seq29870 Length=4575 Score = 147 bits (162), Expect = 7e-33 Identities = 110/128 (86%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||||| |||| ||| ||| || |||| |||||||||||||||||| Sbjct 4079 GTAGTCATTCCAATTACCAGACTCAAT-GAGTCCGGTATTGTTATTTATTGTCACTACCT 4137 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||| |||||| |||||||||||||||||||||||| ||||||||| ||||| || Sbjct 4138 CCCCATGTTAGGATTGAGTAATTTGCGCGCCTGCTGCCTTCTTTGGATGTGATAGCCATT 4197 Query 121 TCTCAGGC 128 || ||||| Sbjct 4198 TCGCAGGC 4205 >seq7 Length=30551617 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| |||||||||| |||||| | ||| |||||| |||| |||| ||||||| Sbjct 25273183 CTAGAATTACTACGGTTATCCGAGTAGTA-GATACCATCAAACAAACTATAAATGATTTA 25273241 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGAT 446 |||| | |||||||||||||| || || || Sbjct 25273242 ATGAACGATTCGCAGTTTCACAGTCTAAAT 25273271 Score = 87.8 bits (96), Expect = 5e-15 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| | |||||||| | |||| | ||| | |||| |||| |||||||| || Sbjct 25286081 TCTAGAATTACTATGGTTATCCGAGCAGTA-GATACCACCAAACAAACTATAACTGAATT 25286139 Query 416 AATGAGCCATTCGCAGTTTCACTGT 440 |||||||||||| ||||||||| || Sbjct 25286140 AATGAGCCATTCACAGTTTCACAGT 25286164 Score = 84.2 bits (92), Expect = 7e-14 Identities = 73/91 (80%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||| ||||||| || |||||| | || ||| ||||||||||| ||||||||||| Sbjct 25256373 TCTTGAATTACTACAGTTATCGGTATA------TACCATCAAATAAACTATAACTGATTT 25256426 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGAT 446 |||||| ||||||||||||||| || | ||| Sbjct 25256427 AATGAGTCATTCGCAGTTTCACAGTCTCGAT 25256457 >seq6 Length=22682783 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| |||||| || ||||||||||||||||||||||| ||| |||||||||| || Sbjct 20341890 CCGTCACCCGTCACCACGATGGTAGGCCACTATCCTACCATAAAAAATTGATAGGGCGGA 20341949 Query 217 AATTTGAATGAACCATCGCC 236 ||||||||| | ||||||| Sbjct 20341950 AATTTGAATCATGCATCGCC 20341969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509810173696