Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq28157 248 3e-63
seq33892 237 5e-60
seq29870 147 7e-33
seq7 96.9 1e-17
seq6 86.0 2e-14
>seq28157
Length=106540
Score = 248 bits (274), Expect = 3e-63
Identities = 181/209 (87%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 7333 GATTGGGTAATTTGCACGTCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTTTCAGGCTCC 7274
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
|| | ||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 7273 CTATTCGGAATCGAACCCTAATTCTTCGTCACCCGTCACCACCATGGTAGGCCACTATCC 7214
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG-CCATG 250
||||||| |||||||||||||||||||||||||||| | || || | ||||| || ||
Sbjct 7213 TACCATCAAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCAACACAAGGACCGTG 7154
Query 251 CGATTCGTTAAGTTATTATGAATCACCAA 279
|||| || |||||| |||||||| |||
Sbjct 7153 CGATCCGACGAGTTATCATGAATCATCAA 7125
>seq33892
Length=2099
Score = 237 bits (262), Expect = 5e-60
Identities = 146/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 162 GATTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAAGCTCC 103
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
|||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 102 CTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCC 43
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227
||||||| |||||||||||||| |||||||||||||
Sbjct 42 TACCATCAAAAGTTGATAGGGCCGAAATTTGAATGA 7
>seq29870
Length=4575
Score = 147 bits (162), Expect = 7e-33
Identities = 110/128 (86%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||| ||||||||||||| |||| ||| ||| || |||| ||||||||||||||||||
Sbjct 4079 GTAGTCATTCCAATTACCAGACTCAAT-GAGTCCGGTATTGTTATTTATTGTCACTACCT 4137
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||| ||| |||||| |||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 4138 CCCCATGTTAGGATTGAGTAATTTGCGCGCCTGCTGCCTTCTTTGGATGTGATAGCCATT 4197
Query 121 TCTCAGGC 128
|| |||||
Sbjct 4198 TCGCAGGC 4205
>seq7
Length=30551617
Score = 96.9 bits (106), Expect = 1e-17
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416
|||||||||| |||||||||| |||||| | ||| |||||| |||| |||| |||||||
Sbjct 25273183 CTAGAATTACTACGGTTATCCGAGTAGTA-GATACCATCAAACAAACTATAAATGATTTA 25273241
Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGAT 446
|||| | |||||||||||||| || || ||
Sbjct 25273242 ATGAACGATTCGCAGTTTCACAGTCTAAAT 25273271
Score = 87.8 bits (96), Expect = 5e-15
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415
||||||||||| | |||||||| | |||| | ||| | |||| |||| |||||||| ||
Sbjct 25286081 TCTAGAATTACTATGGTTATCCGAGCAGTA-GATACCACCAAACAAACTATAACTGAATT 25286139
Query 416 AATGAGCCATTCGCAGTTTCACTGT 440
|||||||||||| ||||||||| ||
Sbjct 25286140 AATGAGCCATTCACAGTTTCACAGT 25286164
Score = 84.2 bits (92), Expect = 7e-14
Identities = 73/91 (80%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415
||| ||||||| || |||||| | || ||| ||||||||||| |||||||||||
Sbjct 25256373 TCTTGAATTACTACAGTTATCGGTATA------TACCATCAAATAAACTATAACTGATTT 25256426
Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGAT 446
|||||| ||||||||||||||| || | |||
Sbjct 25256427 AATGAGTCATTCGCAGTTTCACAGTCTCGAT 25256457
>seq6
Length=22682783
Score = 86.0 bits (94), Expect = 2e-14
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|||| |||||| || ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 20341890 CCGTCACCCGTCACCACGATGGTAGGCCACTATCCTACCATAAAAAATTGATAGGGCGGA 20341949
Query 217 AATTTGAATGAACCATCGCC 236
||||||||| | |||||||
Sbjct 20341950 AATTTGAATCATGCATCGCC 20341969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509810173696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |