Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28226 197 1e-45 seq2 147 2e-30 >seq28226 Length=90112 Score = 197 bits (218), Expect = 1e-45 Identities = 484/721 (67%), Gaps = 16/721 (2%) Strand=Plus/Plus Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGTTTCGCGCAGGA 61274 |||||||| ||||| ||||| || ||| |||||| || |||| | ||| | | || Sbjct 34373 TTCTTTGCTGCTTCCGACGGCATTGTCTTGGAGAATCTTGCAGGAA-GATTCATGAAAGA 34431 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| || ||||||||| ||||||||| ||||||||||| || |||||| | || Sbjct 34432 AGTTCAAGTATCAGAGGCGCGTGCTTTCTACGGATTCCAGATTGCGATCGAGAATATTCA 34491 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG-CGGGCG-GAACGTGAA 61392 || |||||||| ||| | | || || || || ||| || | | | ||| ||| Sbjct 34492 TTCTGAGATGTATAGTCTCTTGATTGAAACTTATATCCATGATTCTGTTGAGAA---GAA 34548 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || ||||| | || || ||||| || || | | |||||| |||||||| | Sbjct 34549 TCGTTTGTTTCACGCGATTGAGACTATTCCTTGTATTACAAAGAAAGCTGATTGGGCTAT 34608 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 || |||||| | || | | | |||||| |||| | | | || ||||| || Sbjct 34609 GAAATGGATCGA---TTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGT 34665 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || ||| |||||||| |||| || ||||| |||||| | || |||||||| | Sbjct 34666 TGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTTTGGCTTAAAAAACGTGGTTT 34725 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| ||| | || || |||||| | || ||||||||||| || | ||||| || Sbjct 34726 AATGCCTGGTTTAACTTTTTCAAATGAGCTTATTTCACGCGACGAAGGACTTCATTGCGA 34785 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 |||||| |||| ||| | |||| | || |||| | | || ||||||||| Sbjct 34786 TTTTGCCTGTTTG--ATTTATTCGCT-TTTGAGGAATAAACTGAGTGAAGAGCGTGTGAA 34842 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 ||||| ||||| ||||| || || ||||||| | || || | || Sbjct 34843 GACAATTGTGCGTGACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTG 34902 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | | | || |||||| ||| | ||| ||||||||||| |||||||| || | Sbjct 34903 CGCTTTGGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAG 34962 Query 61812 TCTGTTG-GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 ||||| || |||| | || || || |||||| | || || ||||||| | Sbjct 34963 GTTGTTGTGTGAGCTTGGTTGTG-AGAAAATTTATAATGTTCAGAATCCTTTTGATTGGA 35021 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATC 61930 |||| |||||||||| | || || || || ||||| ||||| || || || || |||| Sbjct 35022 TGGATTTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAATATC 35081 Query 61931 A 61931 | Sbjct 35082 A 35082 >seq2 Length=32560536 Score = 147 bits (162), Expect = 2e-30 Identities = 440/663 (66%), Gaps = 26/663 (4%) Strand=Plus/Plus Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 ||||| || || || ||| ||||||||| |||||||| || || || ||| | || || Sbjct 19587040 CAAGTCTCCGAAGCACGTGCTTTCTACGGTTTCCAGATCGCGATCGAAAATATTCATTCT 19587099 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG-CGGGCG-GAACGTGAA-CGA 61395 |||||||| ||| | | || || || || |||| || | | ||| ||| || Sbjct 19587100 GAGATGTATAGTCTCTTGATTGAAACTTATATCAATGATTCTATTGAGAA---GAATCGT 19587156 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCA 61453 ||||| |||| || |||||||| ||| || ||| |||||| |||||||| | | Sbjct 19587157 TTGTTTCATGCAATTGAGACGATTCCGT--GTATCGCGAAGAAAGCTGATTGGGCTATGA 19587214 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 | |||||| | || | | | |||||| |||| || | | || ||||| || | Sbjct 19587215 AATGGATCGA---TTCATCTGATTCATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTG 19587271 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | ||| ||||||| |||| ||| ||||| || ||| | || |||||||| | | Sbjct 19587272 AAGGTATATTTTTTTCTGGAAGTTTTTGTGCAATTTTCTGGCTTAAAAAACGTGGTTTAA 19587331 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| ||| | || || || ||| | || ||||| ||||| || | |||||||||| Sbjct 19587332 TGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGTCTTCATTGTGATT 19587391 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG-GAGGAGCGTGTGGGT 61692 | ||| ||| | || | ||| | | | ||| | | | || ||||||||| Sbjct 19587392 TCGCTTGTTTAC--TTTATTCGC--TTTTGAGAAAGAAACTTAGTGAAGAGCGTGTGAAA 19587447 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA--CGCTTTGCCCG 61750 ||||| ||||| ||||| || || |||||| | ||| ||||| || Sbjct 19587448 ACTATTGTCCGTGATGCGGTTGAGATTGAGAGAGAATTTGTTTGTGAAGCGCTT---CCT 19587504 Query 61751 TCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | | | | || ||||| ||| | | ||| ||||||||||| |||||||| || Sbjct 19587505 TGTGCTTTGGTTGGAATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCTGAT 19587564 Query 61810 CGTCTGTTGGTCGA-TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 | | |||| || |||| | || | || |||||| | || || ||||||| Sbjct 19587565 AGGTTATTGGGTGAGCTTGGTTGTG-GGAAAATTTATAATGTTCAGAATCCTTTTGATTG 19587623 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||||||||| | || || || || ||||| ||||| || || || || || Sbjct 19587624 GATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAGTA 19587683 Query 61929 TCA 61931 ||| Sbjct 19587684 TCA 19587686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397378783846640