Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq28107 168 7e-37 seq38608 161 1e-34 seq1 122 1e-22 seq32521 111 2e-19 seq4 109 6e-19 seq7 107 2e-18 seq2 102 9e-17 seq29563 100 3e-16 seq3 98.7 1e-15 seq38617 95.1 1e-14 >seq28107 Length=123132 Score = 168 bits (186), Expect = 7e-37 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 160186 TGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGG 160245 ||||||||| || ||||| || || |||||| ||| || ||| | ||||||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 160246 TCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCT 160305 |||||| || || |||| ||||||||| || |||||||||||||| |||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 160306 TGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 160365 |||||| || || || || ||||| |||||||||||||| ||||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 160366 GGTATTCGGTGGATCTCT 160383 |||||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq38608 Length=401930 Score = 161 bits (178), Expect = 1e-34 Identities = 150/189 (79%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 162347 ATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTG 162406 || ||||||| || ||||| || ||||| || || || |||||||| ||||||||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 162407 AAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAG 162466 | || ||||||||||| ||||| ||||| || |||||| ||||||| ||| |||| | Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 162467 TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCAC 162526 ||||| || ||||| ||| || ||||||||||||| ||||| || | || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 162527 TGTGAATGG 162535 | | ||||| Sbjct 348742 T-TTAATGG 348735 >seq1 Length=28142018 Score = 122 bits (134), Expect = 1e-22 Identities = 240/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 161611 GGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCC 161670 |||||| | || || || || || | || |||||||| |||||| | || |||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 161671 TATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGT 161730 ||| | || ||| || || | || |||||||| ||||| | | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 161731 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTT--CGTCAGGTGGATC 161787 |||||| || || || || ||||||||| | || || | ||||| ||| | ||| Sbjct 23237621 CATTCT-TTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGT 23237677 Query 161788 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTC 161847 ||| | || || | |||| |||||| || || ||||| ||||||| | || || || Sbjct 23237678 CAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTT 23237737 Query 161848 ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGC 161906 ||| | ||||| |||||||||||| | ||| || | | || ||||| ||||| || | Sbjct 23237738 ATGTTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCAC 23237796 Query 161907 TTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCC 161954 ||||| ||||| | || ||||||||| || || || || ||||| Sbjct 23237797 ATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq32521 Length=1850 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 162346 AATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTT 162405 || || ||||| || ||||| || ||||| || || | |||||||| |||||||||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 162406 GAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGG 162456 || || ||||||||||| ||||| ||||| || |||||| ||||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq4 Length=28907061 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 160959 GGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||||| || || | || || || || | || || ||||| || || || || Sbjct 20821560 GGATGATGTTTACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTG 20821501 Query 161019 TCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATC 161078 || ||||| || ||||||||||||||||| ||||||| |||| | || ||||| || Sbjct 20821500 CCGCGCTGGAGCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTC 20821441 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 |||| |||||| ||||||| |||||||| | ||| ||||| || ||||| ||| | Sbjct 20821440 TGATGGCTCTTTCTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTC 20821381 Query 161139 TTATCCCACTTCTGATGT 161156 ||||| ||| | || || Sbjct 20821380 CTATCCAACTGCAGACGT 20821363 >seq7 Length=30551617 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 160993 GCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAG 161052 ||||| ||||| || || || |||||||||||||| |||||||| |||||||| ||| Sbjct 3659779 GCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGTGCGTGCTCTACCTGTGCTGGGAAG 3659720 Query 161053 ATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAA 161112 ||| |||| |||||||||| |||||| || | || || || | |||| | | Sbjct 3659719 GTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCATATCTCGACGACGGTCAAATAAAT 3659660 Query 161113 TCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154 ||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 3659659 GAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACTTCAGAT 3659618 >seq2 Length=32560536 Score = 102 bits (112), Expect = 9e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 |||||| |||||| |||| || |||| || ||||| || | |||||| |||| Sbjct 25898682 CTTGACCATGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGCAGAGCTGGTTCTTGT 25898741 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTG 161094 ||| ||||||||||||| ||| | ||||| ||| |||| ||| ||||| || Sbjct 25898742 TCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCTTTTCTT 25898801 Query 161095 GATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154 |||||||| || ||||| ||| | || || || || ||||||| || || |||||| Sbjct 25898802 GATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACATCTGAT 25898861 Query 161155 GTAACTATT 161163 || |||||| Sbjct 25898862 GTTACTATT 25898870 >seq29563 Length=4854 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 160236 ACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTA 160295 |||| | |||||||| || || |||| ||||||||| || ||||| |||||||| | Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343 Query 160296 ACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCG 160355 ||| |||| ||||||| || | || || ||||| ||||||||||| || |||||| | Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTAT 4403 Query 160356 GTGTTGCT 160363 |||| ||| Sbjct 4404 GTGTCGCT 4411 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 162332 TTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGG 162391 |||| || || || || || ||||| || |||||||| ||||| || || || |||||| Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 162392 AGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 | |||||||||||||| || ||||||||||| ||||| |||| ||| Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTATCTTAAAT 10151857 >seq38617 Length=370667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAG 162423 || || | ||| || || |||||||||| |||||| ||||||| || |||||||| | Sbjct 75973 TTCGTTTTTCAAGAAATCTGTGCAGCGGAAGATCCT-AATTTGAGACTTTCTACACTGAA 76031 Query 162424 AATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTG---GCACCAGTTGATCAACCGCAT 162480 ||||| ||||| ||||||||| ||||||| | | || || | | ||||||| ||| Sbjct 76032 AATATTCTCTTAAATGAAGGTATTCGTGCGTAGATGAAGGCTCAAA---ATCAACCTCAT 76088 Query 162481 GAGAACTTTGTATTCCCTGAG 162501 || || || ||||||||||| Sbjct 76089 GAAAATCTTATATTCCCTGAG 76109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551106852697800